7055494b015f7d0f4ef355d7c6fb31a67cfb38bf
kate
  Sun Oct 4 15:09:47 2015 -0700
Move GTEx track details into separate file. refs #13504

diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index a8d5330..b2207bb 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -39,33 +39,30 @@
 #include "agpFrag.h"
 #include "agpGap.h"
 #include "ctgPos.h"
 #include "contigAcc.h"
 #include "ctgPos2.h"
 #include "clonePos.h"
 #include "bactigPos.h"
 #include "rmskOut.h"
 #include "xenalign.h"
 #include "isochores.h"
 #include "simpleRepeat.h"
 #include "cpgIsland.h"
 #include "cpgIslandExt.h"
 #include "genePred.h"
 #include "genePredReader.h"
-#include "gtexGeneBed.h"
-#include "gtexTissue.h"
-#include "rainbow.h"
 #include "pepPred.h"
 #include "peptideAtlasPeptide.h"
 #include "wabAli.h"
 #include "genomicDups.h"
 #include "est3.h"
 #include "rnaGene.h"
 #include "tRNAs.h"
 #include "gbRNAs.h"
 #include "encode/encodeRna.h"
 #include "hgMaf.h"
 #include "maf.h"
 #include "stsMarker.h"
 #include "stsMap.h"
 #include "rhMapZfishInfo.h"
 #include "recombRate.h"
@@ -24534,104 +24531,30 @@
 {
 char *table = cartString(cart, "table");
 struct trackDb *tdb = hashFindVal(trackHash, table);
 if (tdb == NULL)
     errAbort("no trackDb entry for %s", table);
 return tdb;
 }
 
 void doQPCRPrimers(struct trackDb *tdb, char *itemName)
 /* Put up page for QPCRPrimers. */
 {
 genericHeader(tdb, itemName);
 doBedDetail(tdb, NULL, itemName);
 } /* end of doQPCRPrimers */
 
-void doGtexGeneExpr(struct trackDb *tdb, char *item)
-/* Details of GTEX gene expression item */
-{
-// Load item from table */
-
-// TODO:  Get full details from Data table 
-struct dyString *dy = dyStringNew(0);
-//char sampleTable[128];
-//safef(sampleTable, sizeof(able), "%sSampleData", tdb->table);
-
-struct sqlConnection *conn = hAllocConn(database);
-char **row;
-struct gtexGeneBed *gtexGene = NULL;
-int expCount = 0;
-if (sqlTableExists(conn, tdb->table))
-    {
-    char query[512];
-    sqlSafef(query, sizeof(query), "select * from %s where name = '%s'", tdb->table, item);
-    struct sqlResult *sr = sqlGetResult(conn, query);
-    row = sqlNextRow(sr);
-    if (row != NULL)
-        {
-        gtexGene = gtexGeneBedLoad(row);
-        expCount = gtexGene->expCount;
-        }
-    sqlFreeResult(&sr);
-    }
-hFreeConn(&conn);
-
-genericHeader(tdb, item);
-
-if (gtexGene != NULL)
-    {
-    printf("<b>Gene name:</b> %s<br>\n", gtexGene->name);
-    printf("<b>Ensembl gene:</b> %s<br>\n", gtexGene->geneId);
-    printf("<b>Ensembl transcript:</b> %s<br>\n", gtexGene->transcriptId);
-    }
-printTrackHtml(tdb);
-
-// Print out tissue table with color assignments
-conn = hAllocConn("hgFixed");
-char *tissueTable = "gtexTissue";
-if (sqlTableExists(conn, tissueTable))
-    {
-    dyStringPrintf(dy, "<table>");
-    dyStringPrintf(dy, "<tr><td><b>Color<b></td><td><b>Tissue<b></td></tr>\n");
-    int i;
-    double invExpCount = 1.0/expCount;
-    char query[512];
-    sqlSafef(query, sizeof(query), "select * from %s", tissueTable);
-    struct sqlResult *sr = sqlGetResult(conn, query);
-    for (i=0; i<expCount; i++)
-        {
-        row = sqlNextRow(sr);
-        if (row == NULL)
-            break;
-        struct gtexTissue *tissue = gtexTissueLoad(row);
-        double colPos = invExpCount * i;
-        struct rgbColor color = saturatedRainbowAtPos(colPos);
-        dyStringPrintf(dy, "<tr><td bgcolor='#%02X%02X%02X'></td><td>%s</td></tr>\n",
-                    color.r, color.g, color.b, tissue->description);
-        }
-    sqlFreeResult(&sr);
-    }
-hFreeConn(&conn);
-dyStringPrintf(dy, "</table>");
-puts(dy->string);
-
-//cartWebStart(cart, database, "List of items assayed in %s", clusterTdb->shortLabel);
-
-//genericClickHandlerPlus(tdb, item, item, dy->string);
-dyStringFree(&dy);
-}
-
 void doSnakeClick(struct trackDb *tdb, char *itemName)
 /* Put up page for snakes. */
 {
 genericHeader(tdb, itemName);
 char *otherSpecies = trackHubSkipHubName(tdb->table) + strlen("snake");
 char *hubName = cloneString(database);
 char otherDb[4096];
 char *qName = cartOptionalString(cart, "qName");
 int qs = atoi(cartOptionalString(cart, "qs"));
 int qe = atoi(cartOptionalString(cart, "qe"));
 int qWidth = atoi(cartOptionalString(cart, "qWidth"));
 
 if(trackHubDatabase(database))
     {
     char *ptr = strchr(hubName + 4, '_');