1bae3cecd9581968ad782c5f932cf8f504363399
kate
  Wed Aug 26 09:02:11 2015 -0700
Expand GTEx sample table.  Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504

diff --git src/hg/lib/gtexSample.as src/hg/lib/gtexSample.as
index 72a6a1a..b3cfaea 100644
--- src/hg/lib/gtexSample.as
+++ src/hg/lib/gtexSample.as
@@ -1,7 +1,15 @@
 table gtexSample
 "GTEx sample description"
 (
-	string name; "GTEX sample identifier"
-	string tissue; "Tissue name"
-	string donor; "GTEX subject identifier"
+    string sampleId;    "GTEx sample identifier"
+    string tissue;      "Tissue name. Links to tissue table"
+    string donor;       "GTEx subject identifier. Links to donor table"
+    int autolysisScore; "Level of tissue self-digestion (0-3; none,mild,moderate,severe, -1 if unknown)"
+    string ischemicTime; "Time from tissue removal to preservation, in 4hr intervals"
+    float rin;          "RNA Integrity Number"
+    string collectionSites;  "GTEx Biospecimen Source Site list"
+    string batchId;     "Nucleic acid isolation batch ID"
+    string isolationType;   "Type of nucleic acid isolation"
+    string isolationDate;   "Date of nucleic acid isolation"
+    string pathNotes;   "Pathology report notes"
 )