5de752e3fa6fd4941978107956e2a87b4c5b46ee
kate
  Thu Jul 16 12:04:16 2015 -0700
Add support for GTEX tissue color scheme. refs #15645

diff --git src/hg/lib/gtexTissue.c src/hg/lib/gtexTissue.c
index 91b671e..a05ed0b 100644
--- src/hg/lib/gtexTissue.c
+++ src/hg/lib/gtexTissue.c
@@ -12,30 +12,66 @@
 
 char *gtexTissueCommaSepFieldNames = "id,name,description,organ,color";
 
 void gtexTissueStaticLoad(char **row, struct gtexTissue *ret)
 /* Load a row from gtexTissue table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->id = sqlUnsigned(row[0]);
 ret->name = row[1];
 ret->description = row[2];
 ret->organ = row[3];
 ret->color = sqlUnsigned(row[4]);
 }
 
+struct gtexTissue *gtexTissueLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gtexTissue from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gtexTissueFreeList(). */
+{
+struct gtexTissue *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gtexTissueLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gtexTissueSaveToDb(struct sqlConnection *conn, struct gtexTissue *el, char *tableName, int updateSize)
+/* Save gtexTissue as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. This function automatically escapes quoted strings for mysql. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( %u,'%s','%s','%s',%u)", 
+	tableName,  el->id,  el->name,  el->description,  el->organ,  el->color);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
 struct gtexTissue *gtexTissueLoad(char **row)
 /* Load a gtexTissue from row fetched with select * from gtexTissue
  * from database.  Dispose of this with gtexTissueFree(). */
 {
 struct gtexTissue *ret;
 
 AllocVar(ret);
 ret->id = sqlUnsigned(row[0]);
 ret->name = cloneString(row[1]);
 ret->description = cloneString(row[2]);
 ret->organ = cloneString(row[3]);
 ret->color = sqlUnsigned(row[4]);
 return ret;
 }