987241ea99c99b93aea51bb63bdf579f927e9d2b kent Wed Oct 7 13:46:09 2015 -0700 Fixing copyright on some old essentially public domain files. diff --git src/inc/codebias.h src/inc/codebias.h index f9b3e00..02282f4 100644 --- src/inc/codebias.h +++ src/inc/codebias.h @@ -1,33 +1,31 @@ -/***************************************************************************** - * Copyright (C) 2000 Jim Kent. This source code may be freely used * - * for personal, academic, and non-profit purposes. Commercial use * - * permitted only by explicit agreement with Jim Kent (jim_kent@pacbell.net) * - *****************************************************************************/ -/* codebias.h - stuff for managing codon bias and finding frame. */ +/* codebias.h - stuff for managing codon bias and finding frame. + * This file is copyright 2000 Jim Kent, but license is hereby + * granted for all use - public, private or commercial. */ + #ifndef CODEBIAS_H #define CODEBIAS_H #ifndef DNAUTIL_H #include "dnautil.h" #endif struct codonBias /* Tendency of codons to occur in a particular region. * Tables are in scaled log probability format. */ { int mark0[64]; int mark1[64][64]; }; struct codonBias *codonLoadBias(char *fileName); /* Create scaled log codon bias tables based on .cod file. * You can freeMem it when you're done. */ int codonFindFrame(DNA *dna, int dnaSize, struct codonBias *forBias); /* Assuming a stretch of DNA is an exon, find most likely frame that it's in. * Beware this routine will replace N's with T's in the input dna.*/ #endif /* CODEBIAS_H */