987241ea99c99b93aea51bb63bdf579f927e9d2b
kent
  Wed Oct 7 13:46:09 2015 -0700
Fixing copyright on some old essentially public domain files.

diff --git src/inc/maDbRep.h src/inc/maDbRep.h
index 77fce3d..5ada039 100644
--- src/inc/maDbRep.h
+++ src/inc/maDbRep.h
@@ -1,62 +1,61 @@
-/*****************************************************************************
- * Copyright (C) 2000 Jim Kent.  This source code may be freely used         *
- * for personal, academic, and non-profit purposes.  Commercial use          *
- * permitted only by explicit agreement with Jim Kent (jim_kent@pacbell.net) *
- *****************************************************************************/
 #ifndef MADBREP_H
 #define MADBREP_H
 
 /* maDbRep.h was originally generated by the autoSql program, which also 
  * generated maDbRep.c and maDbRep.sql.  This header links the database and the RAM 
- * representation of objects. */
+ * representation of objects. 
+ *
+ * This file is copyright 2000 Jim Kent, but license is hereby
+ * granted for all use - public, private or commercial. */
+
 
 struct mrnaAli
 /* An mRNA/genomic alignment */
     {
     struct mrnaAli *next;  /* Next in singly linked list. */
     unsigned id;	/* Unique ID */
     signed char readDir;	/* Read direction of mRNA +1 or -1 */
     signed char orientation;	/* Orientation relative to first BAC */
     unsigned char hasIntrons;	/* True if alignment has introns */
     unsigned char isEst;	/* True if an EST. */
     int score;	/* Score in something like log-odds form */
     char qAcc[13];	/* GenBank Accession for mRNA sequence */
     unsigned qId;	/* Database ID of mRNA sequence */
     unsigned qTotalSize;	/* Total bases (not just aligned) in mRNA */
     unsigned qStart;	/* Start in mRNA sequence */
     unsigned qEnd;	/* End in mRNA sequence */
     unsigned tStartBac;	/* ID of first genomic BAC in alignment */
     unsigned tStartPos;	/* Start position within first BAC */
     unsigned tEndBac;	/* ID of last genomic BAC in alignment */
     unsigned tEndPos;	/* End position within last BAC */
     unsigned blockCount;	/* Number of aligned blocks */
     unsigned *blockSizes;	/* Size of each block */
     unsigned *qBlockStarts;	/* Start of each block in mRNA */
     unsigned *tBlockBacs;	/* BAC each block starts in */
     unsigned *tBlockStarts;	/* Position within BAC of each block start */
     unsigned short *startGoods;	/* Number of perfect bases at start of block */
     unsigned short *endGoods;	/* Number of perfect bases at end of block */
     };
 
 struct mrnaAli *mrnaAliLoad(char **row);
 /* Load a mrnaAli from row fetched with select * from mrnaAli
  * from database.  Dispose of this with mrnaAliFree(). */
 
 void mrnaAliFree(struct mrnaAli **pEl);
 /* Free a single dynamically allocated mrnaAli such as created
  * with mrnaAliLoad(). */
 
 void mrnaAliFreeList(struct mrnaAli **pList);
 /* Free a list of dynamically allocated mrnaAli's */
 
 void mrnaAliOutput(struct mrnaAli *el, FILE *f, char sep, char lastSep);
 /* Print out mrnaAli.  Separate fields with sep. Follow last field with lastSep. */
 
 #define mrnaAliTabOut(el,f) mrnaAliOutput(el,f,'\t','\n');
 /* Print out mrnaAli as a line in a tab-separated file. */
 
 #define mrnaAliCommaOut(el,f) mrnaAliOutput(el,f,',',',');
 /* Print out mrnaAli as a comma separated list including final comma. */
 
 #endif /* MADBREP_H */