1babd191e46c6dd57b202846421f212784f5c116
max
  Tue Nov 3 04:00:20 2015 -0800
adding PFAM to external tools menu refs #16308

diff --git src/hg/hgTracks/extTools.ra src/hg/hgTracks/extTools.ra
index 0374ec6..8bc4025 100644
--- src/hg/hgTracks/extTools.ra
+++ src/hg/hgTracks/extTools.ra
@@ -269,30 +269,42 @@
 param shape_slope 1.9
 param shape_conv_linearlog_i -2.29
 param method p
 param shape_conv_linear_i 0.2
 param deigan_conversion linearlog
 param dangling d2
 param SCREEN $seq
 param shape_conv_linear_s 0.68
 param proceed 
 param svg on
 param noLP on
 param shape_conv_cutoff 0.25
 param shape_intercept -0.7
 param PAGE 2
 
+tool pfam
+shortLabel PFAM Search
+longLabel Annotation of protein domains by the EBI Pfam database
+email pfam-help@ebi.ac.uk
+url http://pfam.xfam.org/search/sequence
+param submit Submit
+param seq $seq
+maxSize 80000
+param chrom $s
+param start $start1
+param db $db
+
 tool promoter2
 shortLabel Promoter 2
 longLabel Vertebrate Transcription Start Site Prediction
 url http://www.cbs.dtu.dk/cgi-bin/webface2.fcgi
 email rapacki@cbs.dtu.dk
 maxSize 50000
 param configfile /usr/opt/www/pub/CBS/services/Promoter-2.0/Promoter.cf
 param SEQPASTE $seq
 param SEQSUB 
 
 tool rsatMeta
 shortLabel RSAT Metazoa
 longLabel Regulatory Sequence Analysis Tools for Metazoa. Can search for Transcription Factor binding sites and over-represented words.
 url http://rsat.sb-roscoff.fr/convert-seq.cgi 
 email Jacques.van-Helden@univ-amu.fr