All File Changes

v326_preview2 to v326_base (2015-11-30 to 2015-12-07) v326

• src/hg/hgMenubar/hgMenubar.c
  • lines changed 1, context: html, text, full: html, text
    our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
    
• src/hg/hgTracks/extTools.ra
  • lines changed 4, context: html, text, full: html, text
    extending extTools.ra help, refs #16308
    
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 36, context: html, text, full: html, text
    Initial work on adding commands to GBiB help page, refs #15219
    
  • lines changed 64, context: html, text, full: html, text
    Updating gbib page with gbib specific commands, refs #15219
    
  • lines changed 3, context: html, text, full: html, text
    Fixing typo on gbib help page, changing from the gbib to just gbib, refs 15219
    
• src/hg/htdocs/goldenPath/pubs.html
  • lines changed 23, context: html, text, full: html, text
    Added 2 new refs, updated Brainey's ref (no RM).
    
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 7, context: html, text, full: html, text
    correct style in tr and td elements and correct use of & in global menu bar items refs #no redmine
    
• src/hg/htdocs/index.html
  • lines changed 1, context: html, text, full: html, text
    our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
    
  • lines changed 2, context: html, text, full: html, text
    add some missing /TD tags refs no redmine
    
  • lines changed 3, context: html, text, full: html, text
    correct style in tr and td elements and correct use of & in global menu bar items refs #no redmine
    
• src/hg/htdocs/indexInfo.html
  • lines changed 10, context: html, text, full: html, text
    correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
    
  • lines changed 1, context: html, text, full: html, text
    correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
    
• src/hg/htdocs/indexIntro.html
  • lines changed 2, context: html, text, full: html, text
    our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
    
  • lines changed 6, context: html, text, full: html, text
    correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
    
  • lines changed 1, context: html, text, full: html, text
    correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
    
  • lines changed 2, context: html, text, full: html, text
    correct use of & in donate button refs #no redmine
    
• src/hg/htdocs/indexNews.html
  • lines changed 5, context: html, text, full: html, text
    correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
    
  • lines changed 1, context: html, text, full: html, text
    correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v326
    
• src/hg/js/model/hgIntegrator/hgIntegratorModel.js
  • lines changed 21, context: html, text, full: html, text
    Disabling buttons doesn't work in IE11, so watch out for duplicate adds of
    the same related table and adding more than the max of related tables.
    
• src/hg/lib/agpGap.as
  • lines changed 4, context: html, text, full: html, text
    adding additional gap n description refs #9868
    
• src/hg/lib/cart.c
  • lines changed 1, context: html, text, full: html, text
    our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
    
• src/hg/lib/googleAnalytics.c
  • lines changed 1, context: html, text, full: html, text
    script tag needs a type specification to avoid W3C verification no redmine
    
• src/hg/lib/web.c
  • lines changed 1, context: html, text, full: html, text
    our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
    
• src/hg/makeDb/doc/felCat8/initialBuild.txt
  • lines changed 1, context: html, text, full: html, text
    reload cytoBandIdeo for some odd reason did not load in Nov of 2014 refs #14412
    
  • lines changed 33, context: html, text, full: html, text
    fixup search rule for assembly track gold table refs #14412
    
• src/hg/makeDb/doc/xenTro7.txt
  • lines changed 5, context: html, text, full: html, text
    rerun genbank to get xenoRefGene refs #9868
    
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 2, context: html, text, full: html, text
    shoulw have refseq mrna xeno on for defaults refs #9868
    
• src/hg/makeDb/trackDb/cat/felCat8/trackDb.ra
  • lines changed 5, context: html, text, full: html, text
    fixup search rule on gold table refs #14412
    
• src/hg/makeDb/trackDb/chainNet.html
  • lines changed 1, context: html, text, full: html, text
    Fixing unescaped double quot on windowmasker and chainNet html pages
    
• src/hg/makeDb/trackDb/cv/beta/cv.ra
  • lines changed 21, context: html, text, full: html, text
    Adding alpha cv.ra changes to beta and public for fix of links refs #16364
    
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 21, context: html, text, full: html, text
    Adding alpha cv.ra changes to beta and public for fix of links refs #16364
    
• src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
  • lines changed 15, context: html, text, full: html, text
    demoting xenTro3 in favor of xenTro7 refs #9868
    
  • lines changed 3, context: html, text, full: html, text
    hg19 uses xenTro3 and hg38 has xenTro7 new refs #9868
    
• src/hg/makeDb/trackDb/human/chainNetXenTro3.ra
  • lines changed 15, context: html, text, full: html, text
    demoting xenTro3 in favor of xenTro7 refs #9868
    
• src/hg/makeDb/trackDb/human/chainNetXenTro7.ra
  • lines changed 16, context: html, text, full: html, text
    demoting xenTro3 in favor of xenTro7 refs #9868
    
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    hg19 uses xenTro3 and hg38 has xenTro7 new refs #9868
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    hg19 uses xenTro3 and hg38 has xenTro7 new refs #9868
    
• src/hg/makeDb/trackDb/human/newChainNet.ra
  • lines changed 16, context: html, text, full: html, text
    demoting xenTro3 in favor of xenTro7 refs #9868
    
• src/hg/makeDb/trackDb/refGene.new.html
  • lines changed 7, context: html, text, full: html, text
    Added refSeq help blurb. refs #15961
    
  • lines changed 6, context: html, text, full: html, text
    Removing mention of quality info from RefSeq description page, refs #16471
    
• src/hg/makeDb/trackDb/tRNAs.html
  • lines changed 1, context: html, text, full: html, text
    Fixing typo as noted as per Bob's code Review
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    Turning off exon numbering for nested repeats track, refs #9868
    
• src/hg/makeDb/trackDb/windowmaskerSdust.html
  • lines changed 1, context: html, text, full: html, text
    Fixing unescaped double quot on windowmasker and chainNet html pages
    
• src/hg/makeDb/trackDb/xenTro/mgcFullMrna.html
  • lines changed 2, context: html, text, full: html, text
    updating track description pages ahead of xenTro7 release. Adding trackDb.chainNet.ra for xenTro7 to specify the matrix and chain lines, refs #9868
    
• src/hg/makeDb/trackDb/xenTro/mgcGenes.html
  • lines changed 2, context: html, text, full: html, text
    updating track description pages ahead of xenTro7 release. Adding trackDb.chainNet.ra for xenTro7 to specify the matrix and chain lines, refs #9868
    
• src/hg/makeDb/trackDb/xenTro/xenTro7/gap.html
  • lines changed 3, context: html, text, full: html, text
    updating track description pages ahead of xenTro7 release. Adding trackDb.chainNet.ra for xenTro7 to specify the matrix and chain lines, refs #9868
    
• src/hg/makeDb/trackDb/xenTro/xenTro7/gold.html
  • lines changed 3, context: html, text, full: html, text
    updating track description pages ahead of xenTro7 release. Adding trackDb.chainNet.ra for xenTro7 to specify the matrix and chain lines, refs #9868
    
• src/hg/makeDb/trackDb/xenTro/xenTro7/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    updating track description pages ahead of xenTro7 release. Adding trackDb.chainNet.ra for xenTro7 to specify the matrix and chain lines, refs #9868
    
• src/hg/makeDb/trackDb/xenTro/xenTro7/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    updating track description pages ahead of xenTro7 release. Adding trackDb.chainNet.ra for xenTro7 to specify the matrix and chain lines, refs #9868
    
• src/utils/bedToBigBed/bedToBigBed.c
  • lines changed 1, context: html, text, full: html, text
    small change to help msg, no redmine
    
• src/utils/qa/weeklybld/authorEmail.pl
  • lines changed 37, context: html, text, full: html, text
    adding full correct email from git system refs #16419
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v326 final build refs #16419
    
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 6, context: html, text, full: html, text
    adding full correct email from git system refs #16419
    

• lines changed: 438
• files changed: 54