Commits for hiram

v326_preview2 to v326_base (2015-11-30 to 2015-12-07) v326

• shoulw have refseq mrna xeno on for defaults refs #9868
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
• rerun genbank to get xenoRefGene refs #9868
  
  • src/hg/makeDb/doc/xenTro7.txt - lines changed 5, context: html, text, full: html, text
• reload cytoBandIdeo for some odd reason did not load in Nov of 2014 refs #14412
  
  • src/hg/makeDb/doc/felCat8/initialBuild.txt - lines changed 1, context: html, text, full: html, text
• script tag needs a type specification to avoid W3C verification no redmine
  
  • src/hg/lib/googleAnalytics.c - lines changed 1, context: html, text, full: html, text
• our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
  
  • src/hg/hgMenubar/hgMenubar.c - lines changed 1, context: html, text, full: html, text
• our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
  
  • src/hg/lib/cart.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/web.c - lines changed 1, context: html, text, full: html, text
• our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
  
  • src/hg/htdocs/index.html - lines changed 1, context: html, text, full: html, text
• add some missing /TD tags refs no redmine
  
  • src/hg/htdocs/index.html - lines changed 2, context: html, text, full: html, text
• our standard html doc type HTML 4.01 Transitional should not use " />" closing tags, refs no redmine
  
  • src/hg/htdocs/indexIntro.html - lines changed 2, context: html, text, full: html, text
• correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
  
  • src/hg/htdocs/indexInfo.html - lines changed 10, context: html, text, full: html, text
  • src/hg/htdocs/indexIntro.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 5, context: html, text, full: html, text
• correct style definitions for tables and remove dangling tags that have no open tag refs #noredmine
  
  • src/hg/htdocs/indexInfo.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/indexIntro.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 1, context: html, text, full: html, text
• correct style in tr and td elements and correct use of & in global menu bar items refs #no redmine
  
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 7, context: html, text, full: html, text
  • src/hg/htdocs/index.html - lines changed 3, context: html, text, full: html, text
• correct use of & in donate button refs #no redmine
  
  • src/hg/htdocs/indexIntro.html - lines changed 2, context: html, text, full: html, text
• adding additional gap n description refs #9868
  
  • src/hg/lib/agpGap.as - lines changed 4, context: html, text, full: html, text
• fixup search rule on gold table refs #14412
  
  • src/hg/makeDb/trackDb/cat/felCat8/trackDb.ra - lines changed 5, context: html, text, full: html, text
• fixup search rule for assembly track gold table refs #14412
  
  • src/hg/makeDb/doc/felCat8/initialBuild.txt - lines changed 33, context: html, text, full: html, text
• demoting xenTro3 in favor of xenTro7 refs #9868
  
  • src/hg/makeDb/trackDb/human/chainNetVertebrate.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetXenTro3.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetXenTro7.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/newChainNet.ra - lines changed 16, context: html, text, full: html, text
• hg19 uses xenTro3 and hg38 has xenTro7 new refs #9868
  
  • src/hg/makeDb/trackDb/human/chainNetVertebrate.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text