File Changes for ceisenhart

v325_base to v326_preview (2015-11-16 to 2015-11-23) v326

• src/hg/cirm/cdw/wrangle/addMetaDataToJson/addMetaDataToJson
  • lines changed 43, context: html, text, full: html, text
    finishing up the program, making it more general and added in a function to change the corresponding .html file. refs #16182
    
• src/hg/cirm/cdw/wrangle/condenseMatrix/condenseMatrix
  • lines changed 6, context: html, text, full: html, text
    Changing the condense to a sum rather than an average, refs #16182
    
• src/hg/cirm/cdw/wrangle/kallistoOnFastqMani/kallistoOnFastqMani
  • lines changed 49, context: html, text, full: html, text
    Adding changes to a suprogram in the rna seq pipeline, the one that handles Kallisto. refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/rnaSeqToClustersPipeline
  • lines changed 91, context: html, text, full: html, text
    Adding in some changes to make the pipeline more universal, refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/tests/mouse/README
  • lines changed 10, context: html, text, full: html, text
    Adding a mouse test data set for the rna seq pipeline, it should be very small. refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/tests/mouse/fastqFiles/fq1-R1-001.fastq.gz
  • lines changed 0, context: html, text, full: html, text
    Adding a mouse test data set for the rna seq pipeline, it should be very small. refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/tests/mouse/fastqFiles/fq1-R2-001.fastq.gz
  • lines changed 0, context: html, text, full: html, text
    Adding a mouse test data set for the rna seq pipeline, it should be very small. refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/tests/mouse/fastqFiles/fq2-R1-001.fastq.gz
  • lines changed 0, context: html, text, full: html, text
    Adding a mouse test data set for the rna seq pipeline, it should be very small. refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/tests/mouse/fastqFiles/fq2-R2-001.fastq.gz
  • lines changed 0, context: html, text, full: html, text
    Adding a mouse test data set for the rna seq pipeline, it should be very small. refs #16244
    
• src/hg/cirm/cdw/wrangle/rnaSeqToClustersPipeline/tests/mouse/manifest.txt
  • lines changed 5, context: html, text, full: html, text
    Adding a mouse test data set for the rna seq pipeline, it should be very small. refs #16244
    
• src/hg/expMatrixToJson/expMatrixToJson.c
  • lines changed 31, context: html, text, full: html, text
    Added new javascript code to the c program, refs #16341 and #16216
    
• src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.ra
  • lines changed 10, context: html, text, full: html, text
    Adding the tRNA track to the non-coding RNA supertrack refs #11694
    
• src/utils/newPythonProg/newPythonProg.c
  • lines changed 1, context: html, text, full: html, text
    Changing the defaul makefile target from normal to all at Kate's advice, refs# 16352