Commits for angie

v326_preview to v326_preview2 (2015-11-23 to 2015-11-30) v326

• Adding tgpPhase3 to tablesIgnored. refs #14325
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Fixing new warnings/errors caught by -Wunused-but-set-variable .
  
  The change to refreshNamedSessionCustomTracks.c is required by the
  newer-gcc warning -Wunused-result -- that's not a warning on clang (yet),
  but triggers warnings on Ubuntu builds from the past few years.
  Thanks Jonathan for rounding these up.
  
  Note: while merging, it turned out that Hiram had made similar changes.
  I kept my own, i.e. removing vs. commenting out and checking the result
  of the system call in refreshNamedSessionCustomTracks.c.
  
  • src/hg/mouseStuff/orthologBySynteny/orthologBySynteny.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/visiGene/hgVisiGene/printCaption.c - lines changed 1, context: html, text, full: html, text
• Now that annoStreamDb's asObj isn't externally imposed using trackDb,
  hAnnoGetAutoSqlForDbTable needs to watch out for the special case of
  pgSnp custom tracks -- no tableDescriptions, no trackDb when called
  by annoStreamDb, and pgSnp's quirk of including bin in its autoSql.
  
  • src/hg/lib/hAnno.c - lines changed 4, context: html, text, full: html, text
• hgCustom was removing its hgct_navDest var from the cart because it removes
  every "hgct_" cart var when it's done! Tweak the prefix to make navDest
  persist in the cart.
  
  • src/hg/hgCustom/hgCustom.c - lines changed 4, context: html, text, full: html, text