File Changes for braney

v326_preview to v326_preview2 (2015-11-23 to 2015-11-30) v326

• src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
  • lines changed 8, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/encode3/encodeDataWarehouse/utils/edwBamFilter/edwBamFilter.c
  • lines changed 12, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/encode3/encodeDataWarehouse/utils/edwBamRemoveChrom/edwBamRemoveChrom.c
  • lines changed 12, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/encode3/encodeDataWarehouse/utils/edwBamStats/edwBamStats.c
  • lines changed 28, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/encode3/encodeDataWarehouse/utils/edwSamRepeatAnalysis/edwSamRepeatAnalysis.c
  • lines changed 8, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/encode3/validateFiles/validateFiles.c
  • lines changed 17, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/hgTables/bam.c
  • lines changed 10, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/hgTracks/bamTrack.c
  • lines changed 12, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/hgc/bamClick.c
  • lines changed 4, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/inc/hgBam.h
  • lines changed 4, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/lib/hgBam.c
  • lines changed 22, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/hg/makeDb/trackDb/mouse/snp142.html
  • lines changed 5, context: html, text, full: html, text
    tweak mm10 snp142 HTML files #15934
    
• src/hg/makeDb/trackDb/mouse/snp142.shared.html
  • lines changed 42, context: html, text, full: html, text
    tweak mm10 snp142 HTML files #15934
    
• src/hg/makeDb/trackDb/mouse/snp142Common.html
  • lines changed 1, context: html, text, full: html, text
    tweak mm10 snp142 HTML files #15934
    
• src/hg/makeDb/trackDb/mouse/snp142Mult.html
  • lines changed 1, context: html, text, full: html, text
    tweak mm10 snp142 HTML files #15934
    
• src/hg/mouseStuff/chainStats/chainStats.c
  • lines changed 215, context: html, text, full: html, text
    remove mouseStuff/chainStats... program never useful (no redmine)
    
• src/hg/mouseStuff/chainStats/makefile
  • lines changed 3, context: html, text, full: html, text
    remove mouseStuff/chainStats... program never useful (no redmine)
    
• src/hg/mouseStuff/makefile
  • lines changed 1, context: html, text, full: html, text
    remove chainStats from makefile
    
• src/inc/bamFile.h
  • lines changed 22, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/inc/common.mk
  • lines changed 16, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/inc/linefile.h
  • lines changed 18, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/lib/bamFile.c
  • lines changed 58, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/lib/knetUdc.c
  • lines changed 9, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/lib/linefile.c
  • lines changed 50, context: html, text, full: html, text
    support htslib for sam/bam/cram/tabix support #14717
    
• src/lib/tests/pipelineTester.c
  • lines changed 1, context: html, text, full: html, text
    pipelineTester needs INT_MAX from limits.h thqt is normally included by
    tabix.h