Commits for markd

v326_preview to v326_preview2 (2015-11-23 to 2015-11-30) v326

• fixed unused variable warnings
  
  • src/hg/gbToFaRa/gbToFaRa.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/retroClick.c - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbAlignGet.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/process/gbProcess.c - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/hgKgMrna/hgKgMrna.c - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/outside/hgBioCyc/hgBioCyc.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/outside/hgCGAP/hgCGAP.c - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/hgJaxQtl/hgJaxQtl.c - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/outside/hgSuperfam/hgSuperfam.c - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/outside/yeast/hgYeastRegCode/hgYeastRegCode.c - lines changed 2, context: html, text, full: html, text
• added filter by tag and highlightBy method and tag to GENCODE V19 to match what is in hg38 GENCODE (no RM)
  
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.ra - lines changed 9, context: html, text, full: html, text
• added missing transcript records in genePredToGtf conversion
  
  • src/hg/genePredToGtf/genePredToGtf.c - lines changed 5, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/basicSimpleTest.gtf - lines changed 12, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/basicTest.gtf - lines changed 15, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/honorTest.gtf - lines changed 15, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf - lines changed 12, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/expected/utrTest.gtf - lines changed 15, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/makefile - lines changed 5, context: html, text, full: html, text