3db237ff65edd8bfc52f4b22088feb2acbc78bd0
mspeir
  Tue Nov 24 11:32:18 2015 -0800
Correcting spelling mistakes in usage and error messages, refs #14062

diff --git src/utils/uniprotLift src/utils/uniprotLift
index baddfe7..61b7a80 100755
--- src/utils/uniprotLift
+++ src/utils/uniprotLift
@@ -125,31 +125,31 @@
     dbSnpIds = [mut.dbSnpId for mut in muts]
 
     # set the bed name field to a disease, to the mutation or something else
     if isMut and mut.origAa=="":
         bed[3] = "%s-%s:del" % (mut.begin, mut.end)
     else:
         bed[3] = "%s->%s" % (mut.origAa, mut.mutAa)
 
     disName = ",".join(disCodes)
     if len(disName)>30:
         disName = disName[:30]+"..."
     if len(disCodes)>0 and not "strain" in disName:
         bed[3] += " in %s" % disName
 
     if mut.featType=="sequence variant":
-        varType = "Naturally occuring sequence variant"
+        varType = "Naturally occurring sequence variant"
         bed[8] = "100,0,0"
     elif mut.featType=="mutagenesis site":
         varType = "Experimental mutation of amino acids"
         bed[8] = "0,0,100"
     else:
         bed[3] = mut.shortFeatType
         if mut.featType in useComment:
             bed[3] = mut.comment
 
         if mut.featType=="signal peptide":
             bed[3] = "Signal peptide"
         if mut.featType=="lipid moiety-binding region":
             bed[3] = "Lipidation"
         if mut.featType=="transmembrane region":
             bed[3] = "Transmembrane"