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08 January 2016 -
- dbSNP 144 Available for hg19 and hg39
+ dbSNP 144 Available for hg19 and hg38
We are pleased to announce the release of four tracks derived
from NCBI
dbSNP Build 144 data, available on the two most
recent human assemblies GRCh37/hg19 and GRCh38/hg38.
There are four SNP tracks available as part of this release.
One is a track containing all mappings of reference SNPs
to the human assembly, labeled "All SNPs (144)".
The other three tracks are subsets of this track
and show interesting and easily defined subsets of dbSNP:
- Common SNPs (144): uniquely mapped variants that appear
in at least 1% of the population or are 100% non-reference
- Flagged SNPs (144): uniquely mapped variants, excluding
Common SNPs, that have been flagged by dbSNP as
"clinically associated"
- Mult. SNPs (144): variants that have been mapped to more
than one genomic location
By default, only the Common SNPs (144) are visible;
other tracks must be made visible using the track controls.
You will find the other SNPs (144) tracks on both
of GRCh37/hg19 and GRCh38/hg38 browsers in the "Variation" group.
The tracks were produced at UCSC by Angie Hinrichs and
Luvina Guruvadoo. We'd like to thank the dbSNP group at
NCBI for providing access to these data.
21 December 2015 -
Two New Assemblies Now Available in the Genome Browser
A Genome Browser is now available for the frog (Xenopus tropicalis)
assembly released September 2012 by the US DOE Joint Genome Institute (JGI-PGF)
(JGI v7.0, UCSC version xenTro7). For more
information and statistics about this assembly, see the NCBI assembly record
for
Xtropicalis_v7. There are 7,728 scaffolds with a total size of 1,437,530,879
bases.
Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser
FTP server or the
Downloads page.
Please observe the conditions for use when
accessing and using these data sets. The annotation tracks for this browser were
generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the
organizations and individuals who contributed to this release.
---
A Genome Browser is now available for the cat (Felis catus)
assembly released November 2014 by the International Cat Genome Sequencing Consortium
(ICGSC version Felis_catus_8.0, UCSC version felCat8). For more
information and statistics about this assembly, see the NCBI assembly record
for
Felis_catus_8.0. There are 267,625 scaffolds with a total size of 2,641,342,258
bases.
Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser
FTP server or the
Downloads page.
Please observe the conditions for use when
accessing and using these data sets. The annotation tracks for this browser were
generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the
organizations and individuals who contributed to this release.
16 December 2015 —
Output from Related Tables Now Available in the Data Integrator:
You can now obtain data from these related tables in your output from the
Data Integrator.
Read more.
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