82767de63e2189c4279b085cfce2749a4797990f luvina Fri Jan 8 08:45:29 2016 -0800 made correction and added post to archives section diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 055b782..562f6b3 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,155 +1,156 @@ <!-- News Section ============================================- --> <TABLE style="background-color:#888888; width: 100%; border-width: 0px; border-spacing: 0px; padding: 0px"> <TR><TD> <TABLE style="background-color:#fffee8; width: 100%; border-width: 0px; border-spacing: 0px; padding: 0px"> <TR><TD> <TABLE style="background-color:#D9E4F8; background-image: url('images/hr.gif'); width: 100%; border: 0px"> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow @GenomeBrowser on Twitter" alt="Follow @GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a> <a title="Genome Browser Facebook page" href="http://www.facebook.com/ucscGenomeBrowser" target="_blank"><img src="/images/FB-f-Logo__blue_22.jpg" style="vertical-align:text-bottom; margin-left: 15px;" alt="Genome Browser Facebook page"></a> <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a> </TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE style="background-color:#fffee8; width: 100%; padding: 0px"> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list. Please see our <a href="http://genome.ucsc.edu/blog" target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more. </p> <!-- start news --> <hr> <p> <font color="#006666" size="4"><b> 08 January 2016 - - dbSNP 144 Available for hg19 and hg39</b></font> + dbSNP 144 Available for hg19 and hg38</b></font> <p> We are pleased to announce the release of four tracks derived from NCBI <a href="http://www.ncbi.nlm.nih.gov/SNP/"> dbSNP</a> Build 144 data, available on the two most recent human assemblies GRCh37/hg19 and GRCh38/hg38. </p> <p> There are four SNP tracks available as part of this release. One is a track containing all mappings of reference SNPs to the human assembly, labeled "All SNPs (144)". The other three tracks are subsets of this track and show interesting and easily defined subsets of dbSNP: </p> <ul> <li>Common SNPs (144): uniquely mapped variants that appear in at least 1% of the population or are 100% non-reference</li> <li>Flagged SNPs (144): uniquely mapped variants, excluding Common SNPs, that have been flagged by dbSNP as "clinically associated"</li> <li>Mult. SNPs (144): variants that have been mapped to more than one genomic location</li> </ul> <p> By default, only the Common SNPs (144) are visible; other tracks must be made visible using the track controls. You will find the other SNPs (144) tracks on both of GRCh37/hg19 and GRCh38/hg38 browsers in the "Variation" group. </p> <p> The tracks were produced at UCSC by Angie Hinrichs and Luvina Guruvadoo. We'd like to thank the dbSNP group at NCBI for providing access to these data. </p> <hr> <p> <font color="#006666" size="4"><b> 21 December 2015 - Two New Assemblies Now Available in the Genome Browser</b></font> <p> A Genome Browser is now available for the frog (<em>Xenopus tropicalis</em>) assembly released September 2012 by the <a href="http://genome.jgi.doe.gov/" target="_blank">US DOE Joint Genome Institute (JGI-PGF)</a> (JGI v7.0, UCSC version xenTro7). For more information and statistics about this assembly, see the NCBI assembly record for <a href="http://www.ncbi.nlm.nih.gov/assembly/515038" target="_blank"> Xtropicalis_v7</a>. There are 7,728 scaffolds with a total size of 1,437,530,879 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro7/">FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#xentro">Downloads</a> page. Please observe the <a href="goldenPath/credits.html#xentro_use">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators woldwide. See the <a href="goldenPath/credits.html#xentro_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> --- <p> A Genome Browser is now available for the cat (<em>Felis catus</em>) assembly released November 2014 by the International Cat Genome Sequencing Consortium (ICGSC version Felis_catus_8.0, UCSC version felCat8). For more information and statistics about this assembly, see the NCBI assembly record for <a href="http://www.ncbi.nlm.nih.gov/assembly/1373248" target="_blank"> Felis_catus_8.0</a>. There are 267,625 scaffolds with a total size of 2,641,342,258 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat8/">FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#cat">Downloads</a> page. Please observe the <a href="goldenPath/credits.html#cat_use">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators woldwide. See the <a href="goldenPath/credits.html#cat_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> <!-- start archives --> <!--staged for future release - - - - + <p> + <font color="#006666" size="4"><b>08 January 2016 — + dbSNP 144 Available for hg19 and hg38 + <a href="goldenPath/newsarch.html#010816">Read more</a>. + </p> <p> <font color="#006666" size="4"><b> 21 December 2015 - Two New Assemblies Now Available in the Genome Browser</b></font> <p> Genome Browsers are now available for the frog (<em>Xenopus tropicalis</em>) and cat (<i>Felis catus</i>) assemblies. <a href="goldenPath/newsarch.html#122115">Read more</a>. </p> --> <p> <font color="#006666" size="4"><b>16 December 2015 — Output from Related Tables Now Available in the Data Integrator</b>: </font> You can now obtain data from these related tables in your output from the <a href="cgi-bin/hgIntegaror">Data Integrator</a>. <a href="goldenPath/newsarch.html#121615">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>