Commits for max

v327_preview2 to v327_base (2016-01-04 to 2016-01-11) v327

• add missing table for pubsMarkerAnnot table in all.join, refs #16610
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• updating GBIB hg.conf so that it allows local adaptations in
  hg.conf.local, refs #16616
  
  • src/browserbox/root/.my.cnf - lines changed 11, context: html, text, full: html, text
  • src/browserbox/usr/local/apache/cgi-bin/hg.conf - lines changed 8, context: html, text, full: html, text
  • src/browserbox/usr/local/apache/cgi-bin/hg.conf.local - lines changed 2, context: html, text, full: html, text
• adding a small note to the all joiner readme file, as it took me a while
  to find the command to update my all.joiner file. no redmine.
  
  • src/hg/makeDb/schema/joiner.doc - lines changed 3, context: html, text, full: html, text
• add hgFixed etc only when -all has been specified for makeTableList, no redmine
  
  • src/hg/utils/makeTableList/makeTableList.c - lines changed 9, context: html, text, full: html, text
• major change to gbib update script, refs #16616
  
  • src/browserbox/root/updateBrowser.sh - lines changed 132, context: html, text, full: html, text