56c1f0822c181598d6946745d17c348ed8c148e4 angie Fri Dec 11 11:55:07 2015 -0800 Sequence Ontology name change: non_coding_exon_variant --> non_coding_transcript_exon_variant. diff --git src/hg/lib/soTerm.c src/hg/lib/soTerm.c index b3a6ab2..4c8baca 100644 --- src/hg/lib/soTerm.c +++ src/hg/lib/soTerm.c @@ -1,47 +1,47 @@ /* soTerm - Sequence Ontology terms that we use for compatibility with Ensembl & others. */ /* Copyright (C) 2014 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "soTerm.h" char *soTermToString(enum soTerm termNumber) /* Translate termNumber to its string equivalent. Do not modify or free result. */ { switch (termNumber) { case regulatory_region_variant : return "regulatory_region_variant"; break; case stop_retained_variant : return "stop_retained_variant"; break; case exon_loss : return "exon_loss"; break; case splice_acceptor_variant : return "splice_acceptor_variant"; break; case splice_donor_variant : return "splice_donor_variant"; break; case complex_transcript_variant : return "complex_transcript_variant"; break; case stop_lost : return "stop_lost"; break; case coding_sequence_variant : return "coding_sequence_variant"; break; case initiator_codon_variant : return "initiator_codon_variant"; break; case missense_variant : return "missense_variant"; break; case stop_gained : return "stop_gained"; break; case frameshift_variant : return "frameshift_variant"; break; case nc_transcript_variant : return "nc_transcript_variant"; break; case mature_miRNA_variant : return "mature_miRNA_variant"; break; case NMD_transcript_variant : return "NMD_transcript_variant"; break; case _5_prime_UTR_variant : return "5_prime_UTR_variant"; break; case _3_prime_UTR_variant : return "3_prime_UTR_variant"; break; case incomplete_terminal_codon_variant : return "incomplete_terminal_codon_variant"; break; case intron_variant : return "intron_variant"; break; case intergenic_variant : return "intergenic_variant"; break; case splice_region_variant : return "splice_region_variant"; break; case upstream_gene_variant : return "upstream_gene_variant"; break; case downstream_gene_variant : return "downstream_gene_variant"; break; case TF_binding_site_variant : return "TF_binding_site_variant"; break; - case non_coding_exon_variant : return "non_coding_exon_variant"; break; + case non_coding_exon_variant : return "non_coding_transcript_exon_variant"; break; case protein_altering_variant : return "protein_altering_variant"; break; case synonymous_variant : return "synonymous_variant"; break; case inframe_deletion : return "inframe_deletion"; break; case inframe_insertion : return "inframe_insertion"; break; default: errAbort("soTermToString: don't recognize term %u", termNumber); } return "ERROR"; // never get here }