8c908f948b09826c6cb4452ee5b282aca41be85e galt Tue Dec 8 21:52:59 2015 -0800 Multi-region (exonMostly). This work allows people to look at virtual chromosomes from a list of regions and then navigate and perform all of the usual functions on it. diff --git src/hg/hgTables/hgTables.c src/hg/hgTables/hgTables.c index a4c2e6c..da8a0f8 100644 --- src/hg/hgTables/hgTables.c +++ src/hg/hgTables/hgTables.c @@ -1722,30 +1722,34 @@ /* hgTables - Get table data associated with tracks and intersect tracks. * Here we set up cart and some global variables, dispatch the command, * and put away the cart when it is done. */ { char *clade = NULL; setUdcCacheDir(); oldVars = hashNew(10); /* Sometimes we output HTML and sometimes plain text; let each outputter * take care of headers instead of using a fixed cart*Shell(). */ cart = cartAndCookieNoContent(hUserCookie(), excludeVars, oldVars); +// Try to deal with virt chrom position used by hgTracks. +if (startsWith("virt:", cartUsualString(cart, "position", ""))) + cartSetString(cart, "position", cartUsualString(cart, "nonVirtPosition", "")); + /* Set up global variables. */ allJoiner = joinerRead("all.joiner"); getDbGenomeClade(cart, &database, &genome, &clade, oldVars); freezeName = hFreezeFromDb(database); int timeout = cartUsualInt(cart, "udcTimeout", 300); if (udcCacheTimeout() < timeout) udcSetCacheTimeout(timeout); knetUdcInstall(); char *backgroundStatus = cartUsualString(cart, "backgroundStatus", NULL); if (backgroundStatus) { getBackgroundStatus(backgroundStatus); exit(0);