7cab12e72257613d386b4dc49b1b64b324450995 max Tue Dec 8 15:04:48 2015 -0800 fixing malacards after update, refs #14417 diff --git src/hg/hgGene/malacards.c src/hg/hgGene/malacards.c index 995c144..d70acc0 100644 --- src/hg/hgGene/malacards.c +++ src/hg/hgGene/malacards.c @@ -1,84 +1,84 @@ /* malacards - do malacards section. parts copied from gad.c */ /* Copyright (C) 2013 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "hash.h" #include "linefile.h" #include "dystring.h" #include "cheapcgi.h" #include "spDb.h" #include "hgGene.h" #include "hdb.h" #include "net.h" static boolean malacardsExists(struct section *section, struct sqlConnection *conn, char *geneId) /* Return TRUE if malacards table exists and it has an entry with the gene symbol */ { char query[1024]; char *geneSymbol; if (sqlTableExists(conn, "malacards") == TRUE) { sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m" " where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId); geneSymbol = sqlQuickString(conn, query); if (geneSymbol != NULL) return(TRUE); } return(FALSE); } static void malacardsPrint(struct section *section, struct sqlConnection *conn, char *geneId) /* Print out malacards section. */ { char query[1024]; struct sqlResult *sr; char **row; char *itemName; sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m" " where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId); itemName = sqlQuickString(conn, query); printf("<B>Malacards Gene Search: "); printf("<A HREF='http://www.malacards.org/search/eliteGene/%s' target=_blank>", itemName); printf("%s</B></A>\n", itemName); /* List diseases associated with the gene */ sqlSafef(query, sizeof(query), -"select maladySymbol, urlSuffix, mainName, round(score) from malacards where geneSymbol='%s' order by score desc", +"select maladySymbol, urlSuffix, mainName, round(geneScore) from malacards where isElite=1 and geneSymbol='%s' order by geneScore desc", itemName); sr = sqlMustGetResult(conn, query); row = sqlNextRow(sr); if (row != NULL) printf("<BR><B>Diseases sorted by score: </B>"); while (row != NULL) { char *maladySym = row[0]; char *mainName = row[2]; char *score = row[3]; printf("<A HREF='http://www.malacards.org/card/%s' target=_blank>%s</a> (%s)", maladySym, mainName, score); row = sqlNextRow(sr); if (row!=NULL) printf(", "); } sqlFreeResult(&sr); } struct section *malacardsSection(struct sqlConnection *conn, struct hash *sectionRa) /* Create malacards section. */ { struct section *section = sectionNew(sectionRa, "malacards"); section->exists = malacardsExists; section->print = malacardsPrint; return section; }