258437a833cda3f9607667080713eb843404829b mspeir Mon Dec 21 11:35:27 2015 -0800 Fixes to xenTro7 and felCat8 announcements, refs #9868 #14412 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 51e3f8a..4b49918 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -50,55 +50,55 @@ <p> A Genome Browser is now available for the frog (<em>Xenopus tropicalis</em>) assembly released September 2012 by the <a href="http://genome.jgi.doe.gov/" target="_blank">US DOE Joint Genome Institute (JGI-PGF)</a> (JGI v7.0, UCSC version xenTro7). For more information and statistics about this assembly, see the NCBI assembly record for <a href="http://www.ncbi.nlm.nih.gov/assembly/515038" target="_blank"> Xtropicalis_v7</a>. There are 7,728 scaffolds with a total size of 1,437,530,879 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro7/">FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#xentro">Downloads</a> page. - Please observe the <a href="credits.html#xentro_credits">conditions for use</a> when + Please observe the <a href="goldenPath/credits.html#xentro_credits">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators woldwide. See the <a - href="credits.html#xentro_credits">Credits</a> page for a detailed list of the + href="goldenPath/credits.html#xentro_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> --- <p> A Genome Browser is now available for the cat (<em>Felis catus</em>) assembly released November 2014 by the International Cat Genome Sequencing Consortium - (Broad version EriEur2.0, UCSC version eriEur2). For more + (ICGSC version Felis_catus_8.0, UCSC version felCat8). For more information and statistics about this assembly, see the NCBI assembly record for <a href="http://www.ncbi.nlm.nih.gov/assembly/1373248" target="_blank"> Felis_catus_8.0</a>. There are 267,625 scaffolds with a total size of 2,641,342,258 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat8/">FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#cat">Downloads</a> page. - Please observe the <a href="credits.html#cat_use">conditions for use</a> when + Please observe the <a href="goldenPath/credits.html#cat_use">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators woldwide. See the <a - href="credits.html#cat_credits">Credits</a> page for a detailed list of the + href="goldenPath/credits.html#cat_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> <p> <font color="#006666" size="4"><b>16 December 2015 — Output from Related Tables Now Available in the Data Integrator</b></font> <p> In the UCSC Genome Browser database, detailed information on the annotations for many tracks is stored in extra tables. This information can include things such as identifiers in other databases, transcript status, or other descriptive information. You can now obtain data from these related tables in your output from the <a href="cgi-bin/hgIntegrator">Data Integrator</a>. </p> @@ -115,48 +115,32 @@ <a href="goldenPath/help/hgIntegratorHelp.html">User Guide</a>. </p> <p> Thank you to Angie Hinrichs and Matthew Speir for their work on this feature. </p> <!-- start archives --> <!--staged for future release <p> <font color="#006666" size="4"><b> 21 December 2015 - Two New Assemblies Now Available in the Genome Browser</b></font> <p> - A Genome Browser is now available for the frog (<em>Xenopus tropicalis</em>) - assembly released September 2012 by the <a href="http://genome.jgi.doe.gov/" - target="_blank">US DOE Joint Genome Institute (JGI-PGF)</a> - (JGI v7.0, UCSC version xenTro7). For more - information and statistics about this assembly, see the NCBI assembly record - for <a href="http://www.ncbi.nlm.nih.gov/assembly/515038" target="_blank"> - Xtropicalis_v7</a>. There are 7,728 scaffolds with a total size of 1,437,530,879 - bases. - </p> - - <p> - A Genome Browser is now available for the cat (<em>Felis catus</em>) - assembly released November 2014 by the International Cat Genome Sequencing Consortium - (Broad version EriEur2.0, UCSC version eriEur2). For more - information and statistics about this assembly, see the NCBI assembly record - for <a href="http://www.ncbi.nlm.nih.gov/assembly/1373248" target="_blank"> - Felis_catus_8.0</a>. There are 267,625 scaffolds with a total size of 2,641,342,258 - bases. + Genome Browsers are now available for the frog (<em>Xenopus tropicalis</em>) + and cat (<i>Felis catus</i>) assemblies. <a href="goldenPath/newsarch.html#122115">Read more</a>. </p> <p> <font color="#006666" size="4"><b>16 December 2015 — Output from Related Tables Now Available in the Data Integrator</b>: </font> You can now obtain data from these related tables in your output from the <a href="cgi-bin/hgIntegaror">Data Integrator</a>. <a href="goldenPath/newsarch.html#121615">Read more</a>. </p> --> <p> <font color="#006666" size="4"><b>9 December 2015 — Data from 1000 Genomes Project Phase 3 Now Available</b>: </font> We have made data from Phase 3 of the