e3e21c453e6963fddd0f1c32a1d6a4b9bab685e2 hiram Thu Feb 4 14:57:18 2016 -0800 first pass as display of metadata for NCBI RefSeq track, needs improvement refs #13673 diff --git src/hg/lib/ncbiRefSeqLink.as src/hg/lib/ncbiRefSeqLink.as new file mode 100644 index 0000000..0908f32 --- /dev/null +++ src/hg/lib/ncbiRefSeqLink.as @@ -0,0 +1,22 @@ +table ncbiRefSeqLink +"Metadata for NCBI RefSeq tracks" + ( + string id; "id for this gene or curated item" + string status; "Inferrred, Model, Predicted, Provisional, Reviewed, Validated, Unknown" + string name; "gene name" + string product; "product" + string mrnaAcc; "transcript_id" + string protAcc; "protein_id" + string locusLinkId; "locus link identifier, from Dbxref" + string omimId; "omim identifier, from Dbxref" + string hgnc; "HGNC identifier, from Dbxref" + string genbank; "genbank identifier from Dbxref" + string pseudo; "'true' if pseudo gene, or n/a" + string gbkey; "genbank key: Gene, mRNA, ncRNA, rRNA, tRNA, etc..." + string source; "source: RefSeq, tRNAscan-SE, Gnomon, Curated Genomic, BestRefSeq" + string gene_biotype; "bio type: protein_coding, pseudogene, C_region, J_segment_pseudogene, other" + string gene_synonym; "list of synonym names" + string ncrna_class; "type of RNA: miRNA, lncRNA, snoRNA, etc..." + string note; "other notes from genbank record" + lstring description; "description from rna gbff record via gbProcess" + )