244bcc8165458cea7030fbe22f7a8974ba1f78ce kate Wed Jan 13 16:51:51 2016 -0800 First cut sortable table to select tissues. refs #15645 diff --git src/hg/inc/gtexTissue.h src/hg/inc/gtexTissue.h index 6c5fd64..e1c1b34 100644 --- src/hg/inc/gtexTissue.h +++ src/hg/inc/gtexTissue.h @@ -1,92 +1,95 @@ /* gtexTissue.h was originally generated by the autoSql program, which also * generated gtexTissue.c and gtexTissue.sql. This header links the database and * the RAM representation of objects. */ #ifndef GTEXTISSUE_H #define GTEXTISSUE_H #include "jksql.h" #define GTEXTISSUE_NUM_COLS 5 extern char *gtexTissueCommaSepFieldNames; struct gtexTissue /* GTEx tissue information */ { struct gtexTissue *next; /* Next in singly linked list. */ unsigned id; /* internal id */ char *name; /* short UCSC identifier */ char *description; /* GTEX tissue type detail */ char *organ; /* GTEX tissue collection area */ unsigned color; /* GTEX assigned color */ }; void gtexTissueStaticLoad(char **row, struct gtexTissue *ret); /* Load a row from gtexTissue table into ret. The contents of ret will * be replaced at the next call to this function. */ struct gtexTissue *gtexTissueLoadByQuery(struct sqlConnection *conn, char *query); /* Load all gtexTissue from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with gtexTissueFreeList(). */ void gtexTissueSaveToDb(struct sqlConnection *conn, struct gtexTissue *el, char *tableName, int updateSize); /* Save gtexTissue as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. This function automatically escapes quoted strings for mysql. */ struct gtexTissue *gtexTissueLoad(char **row); /* Load a gtexTissue from row fetched with select * from gtexTissue * from database. Dispose of this with gtexTissueFree(). */ struct gtexTissue *gtexTissueLoadAll(char *fileName); /* Load all gtexTissue from whitespace-separated file. * Dispose of this with gtexTissueFreeList(). */ struct gtexTissue *gtexTissueLoadAllByChar(char *fileName, char chopper); /* Load all gtexTissue from chopper separated file. * Dispose of this with gtexTissueFreeList(). */ #define gtexTissueLoadAllByTab(a) gtexTissueLoadAllByChar(a, '\t'); /* Load all gtexTissue from tab separated file. * Dispose of this with gtexTissueFreeList(). */ struct gtexTissue *gtexTissueCommaIn(char **pS, struct gtexTissue *ret); /* Create a gtexTissue out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new gtexTissue */ void gtexTissueFree(struct gtexTissue **pEl); /* Free a single dynamically allocated gtexTissue such as created * with gtexTissueLoad(). */ void gtexTissueFreeList(struct gtexTissue **pList); /* Free a list of dynamically allocated gtexTissue's */ void gtexTissueOutput(struct gtexTissue *el, FILE *f, char sep, char lastSep); /* Print out gtexTissue. Separate fields with sep. Follow last field with lastSep. */ #define gtexTissueTabOut(el,f) gtexTissueOutput(el,f,'\t','\n'); /* Print out gtexTissue as a line in a tab-separated file. */ #define gtexTissueCommaOut(el,f) gtexTissueOutput(el,f,',',','); /* Print out gtexTissue as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ void gtexTissueCreateTable(struct sqlConnection *conn, char *table); /* Create expression record format table of given name. */ struct gtexTissue *gtexGetTissues(); /* Get tissue id, descriptions, colors, etc. */ +struct hash *gtexGetTissueSampleCount(); +/* Return hash of sample counts keyed by tissue name */ + struct rgbColor gtexTissueBrightenColor(struct rgbColor rgb); /* Increase brightness for better visibility of small items */ #endif /* GTEXTISSUE_H */