ba4333b84dc63534d59b306fea2031d7e8d08fbf
angie
  Thu Jan 14 12:24:50 2016 -0800
Added the capability to substitute $hgsid from the cart in a help file
included by webIncludeHelpFileSubst, for internal links.
Improved the description of hgVai Transcript Status options.
refs #16502

diff --git src/hg/hgVai/hgVai.c src/hg/hgVai/hgVai.c
index 8f8f636..2b02dea 100644
--- src/hg/hgVai/hgVai.c
+++ src/hg/hgVai/hgVai.c
@@ -1303,31 +1303,31 @@
 selectVariants();
 char *geneTrack = selectGenes();
 if (geneTrack != NULL)
     {
     selectRegulatory();
     selectAnnotations(geneTrack);
     selectFilters();
     selectOutput();
     submitAndDisclaimer();
     }
 printf("</FORM>");
 
 jsReloadOnBackButton(cart);
 
 webNewSection("Using the Variant Annotation Integrator");
-webIncludeHelpFile("hgVaiHelpText", FALSE);
+webIncludeHelpFileSubst("hgVaiHelpText", cart, FALSE);
 jsIncludeFile("jquery-ui.js", NULL);
 jsIncludeFile("hgVarAnnogrator.js", NULL);
 jsIncludeFile("ui.dropdownchecklist.js", NULL);
 jsIncludeFile("ddcl.js", NULL);
 }
 
 void doUi()
 /* Set up globals and make web page */
 {
 cartWebStart(cart, database, "Variant Annotation Integrator");
 doMainPage();
 cartWebEnd();
 /* Save variables. */
 cartCheckout(&cart);
 }