Commits for braney

v327_base to v328_preview (2016-01-11 to 2016-01-18) v328

• add search rules for mm10.snp142 #15934
  
  • src/hg/makeDb/trackDb/mouse/trackDb.ra - lines changed 32, context: html, text, full: html, text
• get cdwLib to use htslib
  
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 11, context: html, text, full: html, text
• yet more work on support CRAM under htslib
  
  • src/hg/hgTables/bam.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/bamTrack.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgc/bamClick.c - lines changed 6, context: html, text, full: html, text
  • src/hg/inc/hgBam.h - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/hgBam.c - lines changed 26, context: html, text, full: html, text
  • src/inc/bamFile.h - lines changed 10, context: html, text, full: html, text
  • src/lib/bamFile.c - lines changed 51, context: html, text, full: html, text
• a little more tweaking of CRAM support
  
  • src/lib/bamFile.c - lines changed 2, context: html, text, full: html, text