71a9796039d8c783043e208fb0d64faaec8054f0 cath Wed Jan 20 10:42:20 2016 -0800 Minor edit, Malacards to MalaCards. refs #14417 diff --git src/hg/hgGene/malacards.c src/hg/hgGene/malacards.c index 272f2fd..73fd692 100644 --- src/hg/hgGene/malacards.c +++ src/hg/hgGene/malacards.c @@ -1,97 +1,97 @@ /* malacards - do malacards section. parts copied from gad.c */ /* Copyright (C) 2013 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "hash.h" #include "linefile.h" #include "dystring.h" #include "cheapcgi.h" #include "spDb.h" #include "hgGene.h" #include "hdb.h" #include "net.h" static boolean malacardsExists(struct section *section, struct sqlConnection *conn, char *geneId) /* Return TRUE if malacards table exists and it has an entry with the gene symbol */ { char query[1024]; char *geneSymbol; if (sqlTableExists(conn, "malacards") == TRUE) { sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m" " where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId); geneSymbol = sqlQuickString(conn, query); if (geneSymbol != NULL) return(TRUE); } return(FALSE); } static void malacardsPrint(struct section *section, struct sqlConnection *conn, char *geneId) /* Print out malacards section. */ { char query[1024]; struct sqlResult *sr; char **row; char *itemName; sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m" " where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId); itemName = sqlQuickString(conn, query); -printf("<B>Malacards Gene Search: "); +printf("<B>MalaCards Gene Search: "); printf("<A HREF='http://www.malacards.org/search/bySymbol/%s' target=_blank>", itemName); printf("%s</B></A>\n", itemName); /* List diseases associated with the gene */ sqlSafef(query, sizeof(query), "select maladySymbol, urlSuffix, mainName, round(geneScore), isElite from malacards where geneSymbol='%s' order by geneScore desc", itemName); sr = sqlMustGetResult(conn, query); row = sqlNextRow(sr); if (row != NULL) printf("<BR><B>Diseases sorted by gene-association score: </B>"); int eliteCount = 0; while (row != NULL) { char *maladySym = row[0]; char *mainName = row[2]; char *score = row[3]; char *isElite = row[4]; char *isEliteChar = ""; if (sameWord(isElite, "1")) { isEliteChar = "*"; eliteCount += 1; } printf("<A HREF='http://www.malacards.org/card/%s' target=_blank>%s</a>%s (%s)", maladySym, mainName, isEliteChar, score); row = sqlNextRow(sr); if (row!=NULL) printf(", "); } if (eliteCount!=0) printf("<br><small>* = Manually curated disease association</small>"); sqlFreeResult(&sr); } struct section *malacardsSection(struct sqlConnection *conn, struct hash *sectionRa) /* Create malacards section. */ { struct section *section = sectionNew(sectionRa, "malacards"); section->exists = malacardsExists; section->print = malacardsPrint; return section; }