deafbe03444c22b94478efdba966f57d36d34ceb hiram Thu Jan 21 13:58:47 2016 -0800 same special handling for ce11 as was for ce6 refs #15209 diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index 5713b57..bb36852 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -8589,31 +8589,31 @@ /* Print Ensembl Gene URL. */ { char *shortItemName; // char *genomeStr = ""; unused variable char *genomeStrEnsembl = ""; struct sqlConnection *conn = hAllocConn(database); char cond_str[256], cond_str2[256], cond_str3[256]; char *proteinID = NULL; char *ensPep; char *chp; char ensUrl[256]; char *ensemblIdUrl = trackDbSettingOrDefault(tdb, "ensemblIdUrl", "http://www.ensembl.org"); /* shortItemName is the name without the "." + version */ shortItemName = cloneString(itemName); -/* ensembl gene names are different from their usual naming scheme on ce6 */ +/* ensembl gene names are different from their usual naming scheme on ce6/ce11*/ if (! (startsWith("ce6", database) || startsWith("ce11", database))) { chp = strstr(shortItemName, "."); if (chp != NULL) *chp = '\0'; } genomeStrEnsembl = ensOrgNameFromScientificName(scientificName); if (genomeStrEnsembl == NULL) { warn("Organism %s not found!", organism); fflush(stdout); return; } /* print URL that links to Ensembl transcript details */ if (sameString(ensemblIdUrl, "http://www.ensembl.org") && archive != NULL) @@ -8805,32 +8805,32 @@ safef(geneType, sizeof(geneType), "Ensembl"); safef(gtpTable, sizeof(gtpTable), "ensGtp"); if (hTableExists(database, gtpTable)) hasEnsGtp = TRUE; } else if (startsWith("vega", tdb->table)) { isVega = TRUE; safef(geneType, sizeof(geneType), "Vega"); safef(gtpTable, sizeof(gtpTable), "vegaGtp"); if (hTableExists(database, gtpTable)) hasVegaGtp = TRUE; } /* shortItemName is the name without the "." + version */ shortItemName = cloneString(itemName); -/* ensembl gene names are different from their usual naming scheme on ce6 */ -if (!startsWith("ce6", database)) +/* ensembl gene names are different from their usual naming scheme on ce6/ce11*/ +if (! (startsWith("ce6", database) || startsWith("ce11", database)) ) { chp = strstr(shortItemName, "."); if (chp != NULL) *chp = '\0'; } genomeStrEnsembl = ensOrgNameFromScientificName(scientificName); if (genomeStrEnsembl == NULL) { warn("Organism %s not found!", organism); fflush(stdout); return; } /* print URL that links to Ensembl or Vega transcript details */ if (isEnsembl) {