e4ed48ec94fc067795b47dcbda27130a8d007f56 markd Mon Jan 18 23:37:48 2016 -0800 fixed problem with bigPslToPsl not computing insert counts. Base on previous work that was deemed a waste of time diff --git src/hg/lib/bigPsl.c src/hg/lib/bigPsl.c index bf99660..4991fba 100644 --- src/hg/lib/bigPsl.c +++ src/hg/lib/bigPsl.c @@ -321,17 +321,18 @@ sqlUnsignedDynamicArray(row[8], &psl->tStarts, &sizeOne); assert(sizeOne == psl->blockCount); psl->qStart = sqlSigned(row[9]); psl->qEnd = sqlSigned(row[10]); psl->strand[1] = *row[11]; psl->strand[1] = 0; psl->qSize = sqlSigned(row[12]); sqlUnsignedDynamicArray(row[13], &psl->qStarts, &sizeOne); assert(sizeOne == psl->blockCount); for(ii=0; ii < psl->blockCount; ii++) { psl->tStarts[ii] += psl->tStart; // psl->qStarts[ii] += psl->qStart; } +pslComputeInsertCounts(psl); return psl; }