96180f7e8f52b8b33e3f6e960839f55bcaac4665
hiram
  Tue Feb 9 13:51:27 2016 -0800
need to make hte protein click links for the ncbiRefSeq resf #13673

diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 81a481b..befa85c 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -11508,30 +11508,49 @@
 if (pslList)
     {
     int start = cartInt(cart, "o");
     printf("<H3>mRNA/Genomic Alignments</H3>");
     printAlignments(pslList, start, "ncbiRefSeqPsl", "ncbiRefSeqPsl", itemName);
     }
 else
     {
     printf ("<h4>there is NO alignment for %s</h4><br>\n", itemName);
     }
 
 htmlHorizontalLine();
 
 showGenePos(itemName, tdb);
 
+printf("<h3>Links xyz to sequence:</h3>\n");
+printf("<ul>\n");
+printf("<li>need to figure out how to make these links, these don't work.\n");
+
+// might need something like this: seq = hPepSeq(database, buffer);
+
+puts("<li>\n");
+hgcAnchorSomewhere("htcTranslatedProtein", itemName, "seqNcbiRefSeq",
+		       nrl->mrnaAcc);
+printf("Predicted Protein</a> \n");
+puts("</li>\n");
+puts("<li>\n");
+hgcAnchorSomewhere("htcGeneMrna", itemName, tdb->track, nrl->mrnaAcc);
+printf("%s</a> may be different from the genomic sequence.\n",
+	   "Predicted mRNA");
+puts("</li>\n");
+
+printf("</ul>\n");
+
 printTrackHtml(tdb);
 hFreeConn(&conn);
 }
 
 void doRefGene(struct trackDb *tdb, char *rnaName)
 /* Process click on a known RefSeq gene. */
 {
 struct sqlConnection *conn = hAllocConn(database);
 int start = cartInt(cart, "o");
 int left = cartInt(cart, "l");
 int right = cartInt(cart, "r");
 char *chrom = cartString(cart, "c");
 
 boolean isXeno = sameString(tdb->table, "xenoRefGene");
 if (isXeno)