a67410efc5799d4df0cf424a5bd5b3c9dd5ab7f7
kate
  Thu Feb 4 20:10:09 2016 -0800
Load GTEx V6 gene table in hg19. refs #15645

diff --git src/hg/inc/gtexTranscript.h src/hg/inc/gtexTranscript.h
new file mode 100644
index 0000000..422a059
--- /dev/null
+++ src/hg/inc/gtexTranscript.h
@@ -0,0 +1,79 @@
+/* gtexTranscript.h was originally generated by the autoSql program, which also 
+ * generated gtexTranscript.c and gtexTranscript.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GTEXTRANSCRIPT_H
+#define GTEXTRANSCRIPT_H
+
+#include "jksql.h"
+#define GTEXTRANSCRIPT_NUM_COLS 2
+
+extern char *gtexTranscriptCommaSepFieldNames;
+
+struct gtexTranscript
+/* GTEx Transcript */
+    {
+    struct gtexTranscript *next;  /* Next in singly linked list. */
+    char *geneId;	/* Ensembl Gene ID */
+    char *transcriptName;	/* Ensembl Transcript Name */
+    };
+
+void gtexTranscriptStaticLoad(char **row, struct gtexTranscript *ret);
+/* Load a row from gtexTranscript table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gtexTranscript *gtexTranscriptLoadByQuery(struct sqlConnection *conn, char *query);
+/* Load all gtexTranscript from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gtexTranscriptFreeList(). */
+
+void gtexTranscriptSaveToDb(struct sqlConnection *conn, struct gtexTranscript *el, char *tableName, int updateSize);
+/* Save gtexTranscript as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. This function automatically escapes quoted strings for mysql. */
+
+struct gtexTranscript *gtexTranscriptLoad(char **row);
+/* Load a gtexTranscript from row fetched with select * from gtexTranscript
+ * from database.  Dispose of this with gtexTranscriptFree(). */
+
+struct gtexTranscript *gtexTranscriptLoadAll(char *fileName);
+/* Load all gtexTranscript from whitespace-separated file.
+ * Dispose of this with gtexTranscriptFreeList(). */
+
+struct gtexTranscript *gtexTranscriptLoadAllByChar(char *fileName, char chopper);
+/* Load all gtexTranscript from chopper separated file.
+ * Dispose of this with gtexTranscriptFreeList(). */
+
+#define gtexTranscriptLoadAllByTab(a) gtexTranscriptLoadAllByChar(a, '\t');
+/* Load all gtexTranscript from tab separated file.
+ * Dispose of this with gtexTranscriptFreeList(). */
+
+struct gtexTranscript *gtexTranscriptCommaIn(char **pS, struct gtexTranscript *ret);
+/* Create a gtexTranscript out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gtexTranscript */
+
+void gtexTranscriptFree(struct gtexTranscript **pEl);
+/* Free a single dynamically allocated gtexTranscript such as created
+ * with gtexTranscriptLoad(). */
+
+void gtexTranscriptFreeList(struct gtexTranscript **pList);
+/* Free a list of dynamically allocated gtexTranscript's */
+
+void gtexTranscriptOutput(struct gtexTranscript *el, FILE *f, char sep, char lastSep);
+/* Print out gtexTranscript.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gtexTranscriptTabOut(el,f) gtexTranscriptOutput(el,f,'\t','\n');
+/* Print out gtexTranscript as a line in a tab-separated file. */
+
+#define gtexTranscriptCommaOut(el,f) gtexTranscriptOutput(el,f,',',',');
+/* Print out gtexTranscript as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GTEXTRANSCRIPT_H */
+