85a7688f63357ea593b2d93fb5b9ccefb215f3a3
max
  Wed Jan 27 10:53:36 2016 -0800
renaming malacards.c to malaCards.c by email from Jim. Also changing the
comments but not the table name, as it has already been pushed to the RR. no redmine.

diff --git src/hg/hgGene/malacards.c src/hg/hgGene/malacards.c
deleted file mode 100644
index 73fd692..0000000
--- src/hg/hgGene/malacards.c
+++ /dev/null
@@ -1,97 +0,0 @@
-/* malacards - do malacards section. parts copied from gad.c */
-
-/* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "hash.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "cheapcgi.h"
-#include "spDb.h"
-#include "hgGene.h"
-#include "hdb.h"
-#include "net.h"
-
-static boolean malacardsExists(struct section *section, 
-	struct sqlConnection *conn, char *geneId)
-/* Return TRUE if malacards table exists and it has an entry with the gene symbol */
-{
-char query[1024];
-char *geneSymbol;
-
-if (sqlTableExists(conn, "malacards") == TRUE)
-    {
-    sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m"
-	" where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId);
-    geneSymbol = sqlQuickString(conn, query);
-    if (geneSymbol != NULL) return(TRUE);
-    }
-return(FALSE);
-}
-static void malacardsPrint(struct section *section, 
-	struct sqlConnection *conn, char *geneId)
-/* Print out malacards section. */
-{
-char query[1024];
-struct sqlResult *sr;
-char **row;
-char *itemName;
-
-sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m"
-    " where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId);
-itemName = sqlQuickString(conn, query);
-
-printf("<B>MalaCards Gene Search: ");
-printf("<A HREF='http://www.malacards.org/search/bySymbol/%s' target=_blank>", itemName);
-printf("%s</B></A>\n", itemName);
-
-/* List diseases associated with the gene */
-sqlSafef(query, sizeof(query),
-"select maladySymbol, urlSuffix, mainName, round(geneScore), isElite from malacards where geneSymbol='%s' order by geneScore desc",
-itemName);
-sr = sqlMustGetResult(conn, query);
-row = sqlNextRow(sr);
-
-if (row != NULL) 
-    printf("<BR><B>Diseases sorted by gene-association score:  </B>");
-
-int eliteCount = 0;
-
-while (row != NULL)
-    {
-    char *maladySym = row[0];
-    char *mainName = row[2];
-    char *score = row[3];
-    char *isElite = row[4];
-    char *isEliteChar = "";
-    if (sameWord(isElite, "1"))
-        {
-        isEliteChar = "*";
-        eliteCount += 1;
-        }
-
-    printf("<A HREF='http://www.malacards.org/card/%s' target=_blank>%s</a>%s (%s)",
-        maladySym, mainName, isEliteChar, score);
-    row = sqlNextRow(sr);
-    if (row!=NULL)
-        printf(", ");
-    }
-if (eliteCount!=0)
-    printf("<br><small>* = Manually curated disease association</small>");
-sqlFreeResult(&sr);
-}
-
-struct section *malacardsSection(struct sqlConnection *conn, 
-	struct hash *sectionRa)
-/* Create malacards section. */
-{
-struct section *section = sectionNew(sectionRa, "malacards");
-section->exists = malacardsExists;
-section->print = malacardsPrint;
-return section;
-}
-
-
-
-