df66e5b7936616048e5503a03196ef1684a63a07
kate
  Wed Mar 16 12:07:50 2016 -0700
New schema for GTEX gene bed file.  Removes bogus transcriptId and replaces transcriptClass with geneType. refs #15645

diff --git src/hg/inc/gtexTranscript.h src/hg/inc/gtexTranscript.h
deleted file mode 100644
index 422a059..0000000
--- src/hg/inc/gtexTranscript.h
+++ /dev/null
@@ -1,79 +0,0 @@
-/* gtexTranscript.h was originally generated by the autoSql program, which also 
- * generated gtexTranscript.c and gtexTranscript.sql.  This header links the database and
- * the RAM representation of objects. */
-
-#ifndef GTEXTRANSCRIPT_H
-#define GTEXTRANSCRIPT_H
-
-#include "jksql.h"
-#define GTEXTRANSCRIPT_NUM_COLS 2
-
-extern char *gtexTranscriptCommaSepFieldNames;
-
-struct gtexTranscript
-/* GTEx Transcript */
-    {
-    struct gtexTranscript *next;  /* Next in singly linked list. */
-    char *geneId;	/* Ensembl Gene ID */
-    char *transcriptName;	/* Ensembl Transcript Name */
-    };
-
-void gtexTranscriptStaticLoad(char **row, struct gtexTranscript *ret);
-/* Load a row from gtexTranscript table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-
-struct gtexTranscript *gtexTranscriptLoadByQuery(struct sqlConnection *conn, char *query);
-/* Load all gtexTranscript from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with gtexTranscriptFreeList(). */
-
-void gtexTranscriptSaveToDb(struct sqlConnection *conn, struct gtexTranscript *el, char *tableName, int updateSize);
-/* Save gtexTranscript as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. This function automatically escapes quoted strings for mysql. */
-
-struct gtexTranscript *gtexTranscriptLoad(char **row);
-/* Load a gtexTranscript from row fetched with select * from gtexTranscript
- * from database.  Dispose of this with gtexTranscriptFree(). */
-
-struct gtexTranscript *gtexTranscriptLoadAll(char *fileName);
-/* Load all gtexTranscript from whitespace-separated file.
- * Dispose of this with gtexTranscriptFreeList(). */
-
-struct gtexTranscript *gtexTranscriptLoadAllByChar(char *fileName, char chopper);
-/* Load all gtexTranscript from chopper separated file.
- * Dispose of this with gtexTranscriptFreeList(). */
-
-#define gtexTranscriptLoadAllByTab(a) gtexTranscriptLoadAllByChar(a, '\t');
-/* Load all gtexTranscript from tab separated file.
- * Dispose of this with gtexTranscriptFreeList(). */
-
-struct gtexTranscript *gtexTranscriptCommaIn(char **pS, struct gtexTranscript *ret);
-/* Create a gtexTranscript out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new gtexTranscript */
-
-void gtexTranscriptFree(struct gtexTranscript **pEl);
-/* Free a single dynamically allocated gtexTranscript such as created
- * with gtexTranscriptLoad(). */
-
-void gtexTranscriptFreeList(struct gtexTranscript **pList);
-/* Free a list of dynamically allocated gtexTranscript's */
-
-void gtexTranscriptOutput(struct gtexTranscript *el, FILE *f, char sep, char lastSep);
-/* Print out gtexTranscript.  Separate fields with sep. Follow last field with lastSep. */
-
-#define gtexTranscriptTabOut(el,f) gtexTranscriptOutput(el,f,'\t','\n');
-/* Print out gtexTranscript as a line in a tab-separated file. */
-
-#define gtexTranscriptCommaOut(el,f) gtexTranscriptOutput(el,f,',',',');
-/* Print out gtexTranscript as a comma separated list including final comma. */
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-
-#endif /* GTEXTRANSCRIPT_H */
-