df66e5b7936616048e5503a03196ef1684a63a07
kate
  Wed Mar 16 12:07:50 2016 -0700
New schema for GTEX gene bed file.  Removes bogus transcriptId and replaces transcriptClass with geneType. refs #15645

diff --git src/hg/lib/gtexGeneBed.as src/hg/lib/gtexGeneBed.as
index 0ff79c1..5c1bfcd 100644
--- src/hg/lib/gtexGeneBed.as
+++ src/hg/lib/gtexGeneBed.as
@@ -1,15 +1,14 @@
 table gtexGeneBed
 "BED6+ with additional fields for gene and transcript IDs, and expression experiment scores
     (
     string chrom;       "Reference sequence chromosome or scaffold"
     uint   chromStart;  "Start position in chromosome"
     uint   chromEnd;    "End position in chromosome"
     string name;        "Gene symbol"
     uint   score;      "Score from 0-1000"
     char[1] strand;     "+ or - for strand"
     string geneId;      "Ensembl gene ID, referenced in GTEx data tables"
-    string transcriptId;       "Ensembl ID of Canonical transcript; determines genomic position"
-    string transcriptClass;    "GENCODE transcript class (coding, nonCoding, pseudo)
+    string geneType;    "GENCODE gene biotype"
     uint expCount;      "Number of experiment values"
     float[expCount] expScores; "Comma separated list of experiment scores"
     )