a048e0b385f2984b3de06c29fbe67807ec9ecdbb
mspeir
  Mon Mar 14 15:36:29 2016 -0700
Some updates to my autopushed track QA script. Added log file info to help message. Script now displays help message if it is run with no arguments. Added some checks to make sure important variables aren't empty. Changed how issue messages are generated. Link to log file is at bottom of list of issues found. Fixed some minor bugs including issue with bc not liking very small numbers and script not correctly reporting large coverage differences. Also added script to makefile. refs #12561

diff --git src/utils/qa/makefile src/utils/qa/makefile
index 5f6f3f4..1c37f87 100644
--- src/utils/qa/makefile
+++ src/utils/qa/makefile
@@ -101,30 +101,31 @@
 	cp -p --remove-destination idHitter.csh            ${SCRIPTS}
 	cp -p --remove-destination joinerBatchKeys.csh     ${SCRIPTS}
 	cp -p --remove-destination joinerBatchTimes.csh    ${SCRIPTS}
 	cp -p --remove-destination kgTables                ${SCRIPTS}
 	cp -p --remove-destination gsTables                ${SCRIPTS}
 	cp -p --remove-destination pbTables                ${SCRIPTS}
 	cp -p --remove-destination knownGene.csh           ${SCRIPTS}
 	cp -p --remove-destination linkCheckExclude        ${SCRIPTS}
 	cp -p --remove-destination makeCytoBandIdeo.csh    ${SCRIPTS}
 	cp -p --remove-destination makeFilledBlockBed.csh  ${SCRIPTS}
 	cp -p --remove-destination makeTouchCommands.csh   ${SCRIPTS}
 	cp -p --remove-destination makeUniProtFile.csh     ${SCRIPTS}
 	cp -p --remove-destination net.csh                 ${SCRIPTS}
 	cp -p --remove-destination proteins.csh            ${SCRIPTS}
 	cp -p --remove-destination printMan.csh            ${SCRIPTS}
+	cp -p --remove-destination qaAutoTrack.sh          ${SCRIPTS}
 	cp -p --remove-destination qaConfig.csh            ${SCRIPTS}
 	cp -p --remove-destination qaConfig.bash           ${SCRIPTS}
 	cp -p --remove-destination qaGbTracks              ${SCRIPTS}
 	cp -p --remove-destination qaEncodeTracks.csh      ${SCRIPTS}
 	cp -p --remove-destination qaEnsGenes.csh          ${SCRIPTS}
 	cp -p --remove-destination qaThis.csh              ${SCRIPTS}
 	cp -p --remove-destination realTime.csh            ${SCRIPTS}
 	cp -p --remove-destination removeAlphas            ${SCRIPTS}
 	cp -p --remove-destination retirePushQ.csh         ${SCRIPTS}
 	cp -p --remove-destination runBits.csh             ${SCRIPTS}
 	cp -p --remove-destination runCheckHgFindSpec      ${SCRIPTS}
 	cp -p --remove-destination runJoiner.csh           ${SCRIPTS}
 	cp -p --remove-destination sessionStats.csh        ${SCRIPTS}
 	cp -p --remove-destination showLastGit.csh         ${SCRIPTS}
 	cp -p --remove-destination showProcesslist.csh     ${SCRIPTS}