63c70e73aa73f2ccac190a85b1e43edd988d31ac jcasper Wed Mar 2 15:33:44 2016 -0800 Installing updated hg.conf files from UCSC servers diff --git confs/hgwbeta.hg.conf confs/hgwbeta.hg.conf index 3b292db..6e80a34 100644 --- confs/hgwbeta.hg.conf +++ confs/hgwbeta.hg.conf @@ -1,26 +1,30 @@ # Config file for the UCSC Human Genome server # the format is in the form of name/value pairs # written 'name=value' (note that there is no space between # the name and its value. Also, no blank lines should be in # this file ########################################################### include hg.conf.private +#versionStamped=on +#browser.documentRoot=/usr/local/apache/htdocs-beta +#browser.trixPath=/hive/data/inside/trix/$db_trackDb_beta.ix + # trackDb table to use db.trackDb=trackDb # changing to relative path (adding "..") browser.background=../images/floretBeta.jpg # Comment out to disable new double/query insert highlighting options: browser.indelOptions=on # track search index name. Since this resides in /gbdb/ then beta must have a uniquely named ix browser.trixPath=/data/trix/$db_trackDb.ix # customTracks database is used to hold custom tracks # For performance and security, it is on a separate server. # The database name is fixed at: customTrash # This is a define CUSTOM_TRASH in hg/inc/customTrack.h @@ -74,61 +78,69 @@ wikiTrack.dbList=hg18,mm9,hg19 # session cookie is used during wiki page edits wiki.sessionCookie=wikidb_mw1__session #Parameters for suggestion form suggest.mailSignature=UCSC Genome Browser Staff suggest.mailReturnAddr=genome-www@soe.ucsc.edu suggest.browserName=UCSC Genome Browser # Comment out to turn off survey link in hgTracks and hgGateway # survey=on # Change to survey=off (or remove survey setting) to retire the survey. # survey=https://www.surveymonkey.com/s/5YYTRWQ # surveyLabel=2011 ENCODE Usability Survey +# survey=https://www.bit.ly/ucscTraining +# surveyLabel=More on-site workshops available! # log signals signalsHandler=on +# turn on google analytics by setting this key. This is the identifier +# specified by your analytics account +# set key for analytics account, used in the getTracker(key) function +# -3 for hgwdev, -4 for hgw0, -5 for gBiB, -6 for RR +analyticsKey=UA-4289047-6 + # log stack dumps browser.dumpStack=on # node id # browser.node=2 # Programs required for per-SNP geographic maps of HGDP population # allele frequencies: hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster hgc.ghostscriptPath=/usr/bin/ghostscript udc.cacheDir=../trash/udcCache #makes browser timeout after only 1min (instead of 20min) #browser.cgiExpireMinutes=1 # Parallel fetching of remote network resources using bigDataUrl such as trackHubs and customTracks # how many threads to use (set to 0 to disable) parallelFetch.threads=100 # how long to wait in seconds for parallel fetch to finish parallelFetch.timeout=90 # Temporary flag to help disable new custom track validator if needed # If you turn the flag off, it reverts to the old validator newCustomTrackValidate=on # No Sql Injection settings # values for level are ignore, logOnly, warn, abort -noSqlInj.level=warn +noSqlInj.level=abort # values for dumpStack are on, off noSqlInj.dumpStack=on # line added to turn off the new hash-enhanced hgsid/uid values #browser.sessionKey=off # Apply a maximum to the size of MAF and VCF custom tracks supplied # directly (instead of via bigURLs). #customTracks.maxBytes=52428800 # Log visible tracks to error_log trackLog=on