File Changes for ceisenhart

v330_preview to v330_preview2.1 (2016-03-07 to 2016-03-14) v330

• src/hg/cirm/cdw/wrangle/addMetaDataToJson/addMetaDataToJson
  • lines changed 15, context: html, text, full: html, text
    Fixing the meta data file so it only reads one line as suggested by Jim in #16789, refs #16182
    
• src/hg/cirm/cdw/wrangle/condenseMatrix/condenseMatrix
  • lines changed 49, context: html, text, full: html, text
    Made the dependency files depend on an environment varialbe CIRM as suggested by Max, refs #16244
    
• src/hg/cirm/cdw/wrangle/condenseMatrix/makefile
  • lines changed 3, context: html, text, full: html, text
    Made the dependency files depend on an environment varialbe CIRM as suggested by Max, refs #16244
    
• src/hg/expMatrixClustersForDendrogram/makefile
  • lines changed 3, context: html, text, full: html, text
    Changing the program name as suggested by Jim in #16789, refs #16182
    
• src/hg/expMatrixToJson/expMatrixClustersForDendrogram.c
  • lines changed 636, context: html, text, full: html, text
    Changing the program name as suggested by Jim in #16789, refs #16182
    
• src/hg/expMatrixToJson/expMatrixToJson.c
  • lines changed 160, context: html, text, full: html, text
    Modified the clustering algorithm, added in a sibling comparison function that decides the first born child. Refs #16216
    
  • lines changed 10, context: html, text, full: html, text
    Changing variable names, refs #16216
    
  • lines changed 636, context: html, text, full: html, text
    Changing the program name as suggested by Jim in #16789, refs #16182
    
• src/hg/expMatrixToJson/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    Changing the test directory makefile a bit. Still looking for an easy way to implement changes suggested by Angie, refs #16216
    
• src/hg/js/d3.dendrograms.js
  • lines changed 329, context: html, text, full: html, text
    Some minor changes, cleaning up the code a bit and adding in more comments where needed. Refs #16341
    
  • lines changed 521, context: html, text, full: html, text
    Commenting the code a bunch, refs #16341
    
• src/hg/js/makefile
  • lines changed 1, context: html, text, full: html, text
    Updating the /kent/src/hg/js makefile to include d3.dendrograms.js refs #16341
    
• src/inc/hacTree.h
  • lines changed 5, context: html, text, full: html, text
    Adding in a sibling comparison function to the multi threaded function, refs #16216
    
• src/lib/hacTree.c
  • lines changed 24, context: html, text, full: html, text
    Adding in a sibling comparison function to the multi threaded function, refs #16216
    
• src/utils/bigWigCluster/bigWigCluster.c
  • lines changed 1, context: html, text, full: html, text
    Changed the underlying library file and had to update this program. The program will run the same, now it passes an extra NULL into one of the library functions.