bdd3f5a412a44554713624dbf478a7288653287f
mspeir
  Tue Mar 8 15:24:43 2016 -0800
Adding missing word to announcement. no redmine.

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 <!-- News Section ============================================- -->  
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                  <font size="4"><a name="TOC"></a><b>&nbsp; News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow &#64;GenomeBrowser on Twitter" alt="Follow &#64;GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a>
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                  target="_blank"><img
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                  style="vertical-align:text-bottom; margin-left: 15px;"
                  alt="Genome Browser Facebook page"></a>
                  <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a>
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           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list. Please see our
           <a href="http://genome.ucsc.edu/blog"
           target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more.
           </p>
 
     <!-- start news -->
   <hr>
   <font color="#006666" size="4"><b>8 Mar 2016
   - Combine Multiple Regions of the Genome Browser into a Single Visualization!</b></font>
   <p>
-  Have ever wished you could remove all of the intronic or intergenic regions from the
+  Have you ever wished you could remove all of the intronic or intergenic regions from the
   Genome Browser display? Have you ever dreamed of being able to visualize multiple
   far-flung regions of a genome? Well, now you can with the new &quot;multi-region&quot; option
   in the Genome Browser!
   </p>
 
   <p>
   The multi-region modes provide four different ways to manipulate the display.
   First, we have an &quot;exon-only&quot; mode that allows you to
   remove all of the intergenic and intronic sequences from the display, leaving you with
   only the exonic regions. Next, there is the &quot;gene-only&quot; mode allowing you to remove only
   the intergenic regions from the display, leaving the genes with exons and introns intact.
   Then there is the &quot;custom regions&quot; mode that allows you to use a remote BED file to
   specify the regions you are interested in viewing alongside each other. Lastly, for human
   assemblies hg17 and newer, there is the &quot;alternative haplotype&quot; mode that allows you to
   view a haplotype sequence inserted into its position in the reference genome.
   </p>
 
   <p>
   To access these exciting, new multi-region modes, first select your organism and assembly
   of interest and navigate to the Genome Browser visualization. Below the tracks display,
   there is a button labeled &quot;multi-region&quot;. Clicking this button will bring up
   a configuration box for the different multi-region modes. For example:
   </p>
 
   <p>
   <img style="border: 1px solid black; display: block;"
                 src="images/MultiRegionButton.png">
   </p>
 
   <p>
   From this pop-up, you will be able to switch between the different modes or exit these
   multi-region modes if desired. For instance:
   </p>
 
   <p>
   <img style="border: 1px solid black; display: block;"
                 src="images/MultiRegionConfigurationWindow.png">
   </p>
 
   <p>
   Additionally, you can enter the &quot;Exon-only&quot; mode by typing the keyboard shortcut
   &quot;e&quot; then &quot;v&quot;. You can exit any of the multi-region modes and return to the
   default Genome Browser display by typing the keyboard shortcut &quot;d&quot; then &quot;v&quot;.
   </p>
 
   <p>
   For more information about each individual multi-region mode, please see the
   <a href="goldenPath/help/multiRegionHelp.html">User Guide</a>.
   </p>
 
   <p>
   Thank you to Galt Barber, Matthew Speir, and the entire UCSC Genome Browser quality assurance team for
   all of their efforts in creating these exciting new display modes.
   </p>
 
   <hr>
 <p>
   <font color="#006666" size="4"><b> 10 February 2016 -
   Two New Assemblies Now Available in the Genome Browser</b></font>
   <p>
   A Genome Browser is now available for the mouse lemur (<em>Microcebus murinus</em>)
   assembly released May 2015 by the
 <A HREF="http://www.broadinstitute.org/scientific-community/science/projects/mammals-models/29-mammals-project"
 TARGET="_blank">The Broad Institute</A> and the
 <A HREF="https://www.hgsc.bcm.edu/non-human-primates/mouse-lemur-genome-project"
 TARGET="_blank">Baylor College of Medicine Human Genome Sequencing Center</A>.
   For more information and statistics about this assembly, see the NCBI assembly record
   for <a href="http://www.ncbi.nlm.nih.gov/assembly/329621" target="_blank"> Mmur_2.0</a>.
 There are 10,311 scaffolds with a total size of 2,438,804,424 bases.
   </p>
 
   <p>
   Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser
   <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/micMur2/">FTP server</a> or the
   <a href="http://hgdownload.soe.ucsc.edu/downloads.html#mouse_lemur">Downloads</a> page.
   Please observe the <a href="./goldenPath/credits.html#mouse_lemur_use">conditions for use</a> when
   accessing and using these data sets.  The annotation tracks for this browser were
   generated by UCSC and collaborators worldwide.  See the <a
   href="./goldenPath/credits.html#mouse_lemur_credits">Credits</a> page for a detailed list of the
   organizations and individuals who contributed to this release.
   </p>
   ---
   <p>
   A Genome Browser is now available for the platypus (<em>Ornithorhynchus anatinus</em>)
   assembly released February 2007 by the
 <A HREF="http://genome.wustl.edu/genomes/detail/ornithorhynchus-anatinus/"
 TARGET=_blank>Genome Sequencing Center at Washington University, St. Louis</A>.
 For more information about this assembly, see
 <A HREF="http://www.ncbi.nlm.nih.gov/assembly/237598/" TARGET="_blank">
 Ornithorhynchus_anatinus-5.0.1</A> in the NCBI Assembly database. There are
 201,525 scaffolds with a total size of 1,996,826,513 bases.
   </p>
 
   <p>
   Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser
   <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/ornAna2/">FTP server</a> or the
   <a href="http://hgdownload.soe.ucsc.edu/downloads.html#platypus">Downloads</a> page.
   Please observe the <a href="./goldenPath/credits.html#platypus_use">conditions for use</a> when
   accessing and using these data sets.  The annotation tracks for this browser were
   generated by UCSC and collaborators worldwide.  See the <a
   href="./goldenPath/credits.html#platypus_credits">Credits</a> page for a detailed list of the
   organizations and individuals who contributed to this release.
   </p>
 <hr>
 
 <!-- start archives -->
 <!--staged for future release
 
 	<p>
 	<font color="#006666" size="4"><b>8 Mar 2016
 	- Combine Multiple Regions of the Genome Browser into a Single Visualization!</b></font>
 	<a href="goldenPath/newsarch.html#030816">Read more</a>.
         </p>
 
         <p>
         <font color="#006666" size="4"><b> 10 February 2016 -
         Two New Assemblies Now Available in the Genome Browser</b>: </font>
         Genome Browsers are now available for the mouse lemur 
 	(<em>Microcebus murinus</em>)
         and platypus (<i>Ornithorhynchus anatinus</i>) assemblies.
 	<a href="goldenPath/newsarch.html#021016">Read more</a>. 
         </p>
 
 -->
 	<font color="#006666" size="4"><b>20 Jan 2016 &mdash;
 	dbSNP 142 Available for mm10</b></font>
         <a href="goldenPath/newsarch.html#012016">Read more</a>.
         </p>
         <p>
         <font color="#006666" size="4"><b>08 January 2016 &mdash; 
         dbSNP 144 Available for hg19 and hg38 </font></b>
         <a href="goldenPath/newsarch.html#010816">Read more</a>.
         </p>
 
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