bdd3f5a412a44554713624dbf478a7288653287f mspeir Tue Mar 8 15:24:43 2016 -0800 Adding missing word to announcement. no redmine. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index daefda1..733c8b4 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,181 +1,181 @@ <!-- News Section ============================================- --> <TABLE style="background-color:#888888; width: 100%; border-width: 0px; border-spacing: 0px; padding: 0px"> <TR><TD> <TABLE style="background-color:#fffee8; width: 100%; border-width: 0px; border-spacing: 0px; padding: 0px"> <TR><TD> <TABLE style="background-color:#D9E4F8; background-image: url('images/hr.gif'); width: 100%; border: 0px"> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow @GenomeBrowser on Twitter" alt="Follow @GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a> <a title="Genome Browser Facebook page" href="http://www.facebook.com/ucscGenomeBrowser" target="_blank"><img src="/images/FB-f-Logo__blue_22.jpg" style="vertical-align:text-bottom; margin-left: 15px;" alt="Genome Browser Facebook page"></a> <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a> </TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE style="background-color:#fffee8; width: 100%; padding: 0px"> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list. Please see our <a href="http://genome.ucsc.edu/blog" target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more. </p> <!-- start news --> <hr> <font color="#006666" size="4"><b>8 Mar 2016 - Combine Multiple Regions of the Genome Browser into a Single Visualization!</b></font> <p> - Have ever wished you could remove all of the intronic or intergenic regions from the + Have you ever wished you could remove all of the intronic or intergenic regions from the Genome Browser display? Have you ever dreamed of being able to visualize multiple far-flung regions of a genome? Well, now you can with the new "multi-region" option in the Genome Browser! </p> <p> The multi-region modes provide four different ways to manipulate the display. First, we have an "exon-only" mode that allows you to remove all of the intergenic and intronic sequences from the display, leaving you with only the exonic regions. Next, there is the "gene-only" mode allowing you to remove only the intergenic regions from the display, leaving the genes with exons and introns intact. Then there is the "custom regions" mode that allows you to use a remote BED file to specify the regions you are interested in viewing alongside each other. Lastly, for human assemblies hg17 and newer, there is the "alternative haplotype" mode that allows you to view a haplotype sequence inserted into its position in the reference genome. </p> <p> To access these exciting, new multi-region modes, first select your organism and assembly of interest and navigate to the Genome Browser visualization. Below the tracks display, there is a button labeled "multi-region". Clicking this button will bring up a configuration box for the different multi-region modes. For example: </p> <p> <img style="border: 1px solid black; display: block;" src="images/MultiRegionButton.png"> </p> <p> From this pop-up, you will be able to switch between the different modes or exit these multi-region modes if desired. For instance: </p> <p> <img style="border: 1px solid black; display: block;" src="images/MultiRegionConfigurationWindow.png"> </p> <p> Additionally, you can enter the "Exon-only" mode by typing the keyboard shortcut "e" then "v". You can exit any of the multi-region modes and return to the default Genome Browser display by typing the keyboard shortcut "d" then "v". </p> <p> For more information about each individual multi-region mode, please see the <a href="goldenPath/help/multiRegionHelp.html">User Guide</a>. </p> <p> Thank you to Galt Barber, Matthew Speir, and the entire UCSC Genome Browser quality assurance team for all of their efforts in creating these exciting new display modes. </p> <hr> <p> <font color="#006666" size="4"><b> 10 February 2016 - Two New Assemblies Now Available in the Genome Browser</b></font> <p> A Genome Browser is now available for the mouse lemur (<em>Microcebus murinus</em>) assembly released May 2015 by the <A HREF="http://www.broadinstitute.org/scientific-community/science/projects/mammals-models/29-mammals-project" TARGET="_blank">The Broad Institute</A> and the <A HREF="https://www.hgsc.bcm.edu/non-human-primates/mouse-lemur-genome-project" TARGET="_blank">Baylor College of Medicine Human Genome Sequencing Center</A>. For more information and statistics about this assembly, see the NCBI assembly record for <a href="http://www.ncbi.nlm.nih.gov/assembly/329621" target="_blank"> Mmur_2.0</a>. There are 10,311 scaffolds with a total size of 2,438,804,424 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/micMur2/">FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#mouse_lemur">Downloads</a> page. Please observe the <a href="./goldenPath/credits.html#mouse_lemur_use">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators worldwide. See the <a href="./goldenPath/credits.html#mouse_lemur_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> --- <p> A Genome Browser is now available for the platypus (<em>Ornithorhynchus anatinus</em>) assembly released February 2007 by the <A HREF="http://genome.wustl.edu/genomes/detail/ornithorhynchus-anatinus/" TARGET=_blank>Genome Sequencing Center at Washington University, St. Louis</A>. For more information about this assembly, see <A HREF="http://www.ncbi.nlm.nih.gov/assembly/237598/" TARGET="_blank"> Ornithorhynchus_anatinus-5.0.1</A> in the NCBI Assembly database. There are 201,525 scaffolds with a total size of 1,996,826,513 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/ornAna2/">FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#platypus">Downloads</a> page. Please observe the <a href="./goldenPath/credits.html#platypus_use">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators worldwide. See the <a href="./goldenPath/credits.html#platypus_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> <!-- start archives --> <!--staged for future release <p> <font color="#006666" size="4"><b>8 Mar 2016 - Combine Multiple Regions of the Genome Browser into a Single Visualization!</b></font> <a href="goldenPath/newsarch.html#030816">Read more</a>. </p> <p> <font color="#006666" size="4"><b> 10 February 2016 - Two New Assemblies Now Available in the Genome Browser</b>: </font> Genome Browsers are now available for the mouse lemur (<em>Microcebus murinus</em>) and platypus (<i>Ornithorhynchus anatinus</i>) assemblies. <a href="goldenPath/newsarch.html#021016">Read more</a>. </p> --> <font color="#006666" size="4"><b>20 Jan 2016 — dbSNP 142 Available for mm10</b></font> <a href="goldenPath/newsarch.html#012016">Read more</a>. </p> <p> <font color="#006666" size="4"><b>08 January 2016 — dbSNP 144 Available for hg19 and hg38 </font></b> <a href="goldenPath/newsarch.html#010816">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>