Commits for kate

v331_preview2 to v331_base (2016-04-04 to 2016-04-11) v331

• Fix squish mode problem missing items (falsely 0-length) by using proper scaling function. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 27, context: html, text, full: html, text
• Fine-tuning map boxes for gene models. Now there is one for the label and one for the gene model, which extends to the end of the item (JK request for this latter). refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 87, context: html, text, full: html, text
• Fix squish mode problem missing items (falsely 0-length) by using proper scaling function. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 27, context: html, text, full: html, text
• Fix build err.
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 7, context: html, text, full: html, text
• Fix click box problem -- handling of multi-mapped genes found by QA (Thanks Chris!)
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 16, context: html, text, full: html, text
  • src/hg/hgc/gtexClick.c - lines changed 7, context: html, text, full: html, text
• Temp fix for build error.
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 2, context: html, text, full: html, text
• Changes after Angie code review (tnx!)
  
  • src/hg/hgTracks/hgTracks.h - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
• Changes after Angie code review (tnx!)
  
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 4, context: html, text, full: html, text
• Fix to GTEx limitVis fix, tnx Galt
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 5, context: html, text, full: html, text
• Limit visibility so track switches to squish if too slow in large windows (e.g. >50MB). refs #15645
  
  • src/hg/makeDb/trackDb/human/trackDb.gtex.ra - lines changed 1, context: html, text, full: html, text
• Make graph height proportional to font height in large windows to improve viewing with large fonts. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 2, context: html, text, full: html, text
• Switch details page behavior to always show untransformed values (individual boxplots are already scaled), but include a temp trackDb setting so we can switch behavior back without needing code change for first release if this is requested. refs #15645
  
  • src/hg/hgc/gtexClick.c - lines changed 5, context: html, text, full: html, text
• Change mouseover on graph to always show raw RPKM. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 1, context: html, text, full: html, text
• Tag for gtex details display (for UI flexibility, likely temporary). refs #15645
  
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text