7c56b0e7fc0472632794f415368ef48a9cbd2c71 kate Thu Mar 24 20:49:13 2016 -0700 Remove debug statements. diff --git src/hg/hgTracks/gtexTracks.c src/hg/hgTracks/gtexTracks.c index 13dacfa..12674ba 100644 --- src/hg/hgTracks/gtexTracks.c +++ src/hg/hgTracks/gtexTracks.c @@ -313,45 +313,43 @@ double totalScore = 0.0; int maxNum = 0, i; int expCount = geneBed->expCount; for (i=0; i<expCount; i++) { expScore = geneBed->expScores[i]; if (expScore > maxScore) { maxScore = max(maxScore, expScore); maxNum = i; } totalScore += expScore; } // threshold to consider this gene tissue specific -- a tissue contributes > 10% to // total expression level -//uglyf("gene=%s maxScore=%0.2f totalScore=%0.2f ", geneBed->name, maxScore, totalScore); if (totalScore < 1 || maxScore <= totalScore * .1) return -1; return maxNum; } static Color gtexGeneItemColor(struct track *tg, void *item, struct hvGfx *hvg) /* A bit of tissue-specific coloring in squish mode only, on geneBed item */ { struct gtexGeneBed *geneBed = (struct gtexGeneBed *)item; int id = maxTissueForGene(geneBed); if (id < 0) return MG_BLACK; struct gtexGeneExtras *extras = (struct gtexGeneExtras *)tg->extraUiData; -//uglyf("COLOR maxNum=%d<br>", maxNum); struct rgbColor color = extras->colors[id]; return hvGfxFindColorIx(hvg, color.r, color.g, color.b); } static void gtexGeneLoadItems(struct track *tg) /* Load method for track items */ { if (tg->visibility == tvSquish || tg->limitedVis == tvSquish) tg->itemColor = gtexGeneItemColor; /* Get track UI info */ struct gtexGeneExtras *extras; AllocVar(extras); tg->extraUiData = extras; @@ -603,31 +601,30 @@ return valToClippedHeight(maxExp, maxMedian, viewMax, gtexMaxGraphHeight(), extras->doLogTransform); } static void gtexGeneDrawAt(struct track *tg, void *item, struct hvGfx *hvg, int xOff, int y, double scale, MgFont *font, Color color, enum trackVisibility vis) /* Draw tissue expression bar graph over gene model. Optionally, draw a second graph under gene, to compare sample sets */ { struct gtexGeneExtras *extras = (struct gtexGeneExtras *)tg->extraUiData; struct gtexGeneInfo *geneInfo = (struct gtexGeneInfo *)item; struct gtexGeneBed *geneBed = geneInfo->geneBed; // Color in squish mode using geneClass Color statusColor = getGeneClassColor(hvg, geneBed); if (vis != tvFull && vis != tvPack) { -uglyf("<br>drawAt %s\n", geneBed->name); bedDrawSimpleAt(tg, geneBed, hvg, xOff, y, scale, font, statusColor, vis); return; } int heightPer = tg->heightPer; int graphX = gtexGraphX(geneBed); if (graphX < 0) return; // draw gene model int topGraphHeight = gtexGeneGraphHeight(tg, geneInfo, TRUE); topGraphHeight = max(topGraphHeight, tl.fontHeight); int yZero = topGraphHeight + y - 1; // yZero is bottom of graph int yGene = yZero + gtexGeneMargin() - 1; tg->heightPer = gtexGeneModelHeight(extras) + 1;