41861d25a94c0578853ae4280d195d7d8ca2fcb4
kate
  Mon Mar 21 17:17:46 2016 -0700
Add version awareness to tissue handling. refs #15645

diff --git src/hg/lib/gtexGeneBed.c src/hg/lib/gtexGeneBed.c
index 7b90b3b..ce13b2a 100644
--- src/hg/lib/gtexGeneBed.c
+++ src/hg/lib/gtexGeneBed.c
@@ -230,38 +230,30 @@
 "   chromEnd int unsigned not null,	# End position in chromosome\n"
 "   name varchar(255) not null,	# Gene symbol\n"
 "   score int unsigned not null,	# Score from 0-1000\n"
 "   strand char(1) not null,	# + or - for strand\n"
 "   geneId varchar(255) not null,	# Ensembl gene ID, referenced in GTEx data tables\n"
 "   geneType varchar(255) not null,	# GENCODE gene biotype\n"
 "   expCount int unsigned not null,	# Number of experiment values\n"
 "   expScores longblob not null,	# Comma separated list of experiment scores\n"
           "#Indices\n"
 "   PRIMARY KEY(geneId)\n"
 ")\n",
     table);
 sqlRemakeTable(conn, table, query);
 }
 
-char *gtexVersionSuffix(char *table)
-/* Return version string for a GTEx track table.  For now, just supporting V4 and V6 (default, no suffix )*/
-{
-if (endsWith(table, "V4"))
-    return("V4");
-return("");
-}
-
 char *gtexGeneClass(struct gtexGeneBed *geneBed)
 /* Return gene "class" (analogous to GENCODE transcriptClass) for a GENCODE gene biotype 
  * Mapped as follows:
 
  * coding: IG_C_gene, IG_D_gene, IG_J_gene, IG_V_gene, 
                TR_C_gene, TR_D_gene, TR_J_gene, TR_V_gene 
                polymorphic_pseudogene, protein_coding
 
  * pseudo: IG_C_pseudogene, IG_J_pseudogene, IG_V_pseudogene, TR_J_pseudogene, TR_V_pseudogene,
                pseudogene 
 
  * nonCoding: 3prime_overlapping_ncrna, Mt_rRNA, Mt_tRNA, antisense, lincRNA, miRNA, 
                 misc_RNA, processed_transcript, rRNA, sense_intronic, sense_overlapping, 
                 snRNA, snoRNA
  * (MarkD request out for approval).