9ec1dcec3063b77d0ea2adb3d7e6df7ae70d32fe kate Tue Mar 29 17:59:40 2016 -0700 Strip off repetitive prefix from gene description. refs #15645 diff --git src/hg/hgTracks/gtexTracks.c src/hg/hgTracks/gtexTracks.c index 1345168..9f24ce9 100644 --- src/hg/hgTracks/gtexTracks.c +++ src/hg/hgTracks/gtexTracks.c @@ -417,30 +417,34 @@ // NOTE: Consider loading all gene descriptions to save queries char query[256]; sqlSafef(query, sizeof(query), "select kgXref.description from kgXref where geneSymbol='%s'", geneBed->name); struct sqlConnection *conn = hAllocConn(database); char *desc = sqlQuickString(conn, query); hFreeConn(&conn); if (desc) { // hg38 known genes has extra detail about source; strip it char *fromDetail = strstrNoCase(desc, "(from"); if (fromDetail) *fromDetail = 0; if (strlen(desc) > MAX_DESC) strcpy(desc+MAX_DESC, "..."); + // also strip 'homo sapiens' prefix + #define SPECIES_PREFIX "Homo sapiens " + if (startsWith(SPECIES_PREFIX, desc)) + desc += strlen(SPECIES_PREFIX); geneInfo->description = desc; } slAddHead(&list, geneInfo); geneBed = geneBed->next; geneInfo->geneBed->next = NULL; if (extras->isComparison && (tg->visibility == tvFull || tg->visibility == tvPack)) // compute medians based on configuration (comparisons, and later, filters) loadComputedMedians(geneInfo, extras); geneInfo->height = gtexGeneItemHeight(tg, geneInfo); } slReverse(&list); tg->items = list; } /***********************************************/