Commits for angie

v332_preview2 to v332_base (2016-04-25 to 2016-05-02) v332

773aa9879899908033ea6e64d3344edf069a578e Wed Apr 20 14:47:01 2016 -0700

• Performance improvements: don't do any unnecessary drawing before the first uiState arrives; autocompleteFromTree is actually quite slow so defer it until after the page is displayed.
  
  • src/hg/js/hgGateway.js - lines changed 33, context: html, text, full: html, text

75ed2f8276013b7db6206fa33c555dda152607e4 Mon Apr 25 09:09:00 2016 -0700

• hgGateway needs to support position=lastDbPos.
  
  • src/hg/hgGateway/hgGateway.c - lines changed 4, context: html, text, full: html, text

ef77b08098f12682c3318243d14dfb52cda203f8 Mon Apr 25 11:50:43 2016 -0700

• Cath's suggestion from #15277#note-190: Use the same width for the select assembly menu as for the position input and center the Go button vertically. Also fixed IE8 clobbering of activeGenomes global. refs #15277
  
  • src/hg/js/hgGateway.js - lines changed 73, context: html, text, full: html, text

b7eb0b002d23a4408fdb9d7a3a6520312a889ebc Mon Apr 25 12:53:41 2016 -0700

• Adding back a couple things lost from the original hgGateway (geo mirror check and hub warning check).
  
  • src/hg/hgGateway/hgGateway.c - lines changed 5, context: html, text, full: html, text

485aa503a6d4d83d6aee39332a66e73acac76022 Mon Apr 25 13:29:08 2016 -0700

• Thanks Brian for noticing that the hgwdev warning was missing from the new hgGateway & Cath for suggesting the wording. refs #15277 (notes 192-196).
  
  • src/hg/hgGateway/hgGateway.c - lines changed 34, context: html, text, full: html, text

cd093f718a105986a9433d6d99ebd51b6f296805 Mon Apr 25 15:50:51 2016 -0700

• Fix watermark color-switching. refs #15277 (note 149)
  Also add commas to position.
  
  • src/hg/js/hgGateway.js - lines changed 21, context: html, text, full: html, text

ac78df7079ea1e99ae8426886f2a74099c3418ff Tue Apr 26 09:34:15 2016 -0700

• Position input labeling changes suggested by Cath. refs #15277 (notes 190, 204, 205)
  
  • src/hg/hgGateway/hgGateway.html - lines changed 7, context: html, text, full: html, text
  • src/hg/htdocs/style/jWest.css - lines changed 7, context: html, text, full: html, text

f8257545a49d4f3d482e4491f98b5fb5b9d4933a Tue Apr 26 12:29:59 2016 -0700

• Don't show the hgwdev warning box on demo6 so we can use it for screenshots and videos in advance of release (thx Donna and Cath). refs #15277
  
  • src/hg/hgGateway/hgGateway.c - lines changed 1, context: html, text, full: html, text

d48f39fe56017d31ed77b0d389542ada8ff6277a Tue Apr 26 14:07:58 2016 -0700

• Add geneSymbol to the JSON results so it can be used in place of the verbose item value.
  
  • src/hg/hgSuggest/hgSuggest.c - lines changed 8, context: html, text, full: html, text

625569a67a2fceb5073d032ab1d26509b82dc694 Tue Apr 26 14:08:28 2016 -0700

• Added logic to keep track of whether the position/search box has a gene selected from autocomplete or something the user typed/pasted in.
  Also added hgsid to the form that sends us to hgTracks -- silly that I was forgetting that!
  refs #15277
  
  • src/hg/js/hgGateway.js - lines changed 17, context: html, text, full: html, text

c0c8d67a8b251e347ce93446991664202722c966 Wed Apr 27 11:40:06 2016 -0700

• Scrolling the tree to the selected genome wasn't happening on page load because tree wasn't yet visible -- scroll after .show(). refs #15277
  
  • src/hg/js/hgGateway.js - lines changed 3, context: html, text, full: html, text

c95f690cd307e4d9447cfdeb337c4cc81d21f8aa Wed Apr 27 11:53:56 2016 -0700

• When building list of active genomes and taxIds, join with defaultDb to avoid trouble with same species, different taxId (e.g. species vs. subspecies taxId in sacCer2 vs sacCer3). refs #15277
  
  • src/hg/hgGateway/hgGateway.c - lines changed 6, context: html, text, full: html, text

3c89781b651b870cd2c08856116774e3a9a022e7 Wed Apr 27 14:08:38 2016 -0700

• For gene autocomplete, highlight the part of each gene symbol that matches the search term. refs #15277 note 223
  
  • src/hg/js/hgGateway.js - lines changed 12, context: html, text, full: html, text

7becab8e9c95f4f90d37ef2f8ea215907534d9b3 Wed Apr 27 17:13:54 2016 -0700

• Fixed problem with 'view sequences' button wrapping down in weird ways when the screen was narrow. refs #15277
  
  • src/hg/hgGateway/hgGateway.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/style/jWest.css - lines changed 9, context: html, text, full: html, text
  • src/hg/js/hgGateway.js - lines changed 5, context: html, text, full: html, text

21d53b8ef473ed5f371d2dc14ccbbf3303705f2e Thu Apr 28 09:46:26 2016 -0700

• hg38.kgXref has some extremely long descriptions (e.g. CLOCK 4277 chars) that make it difficult to see the actual matching genes in the pop-up menu. Truncate descriptions for autocomplete at 120 chars.
  
  • src/hg/hgSuggest/hgSuggest.c - lines changed 6, context: html, text, full: html, text

8c4510913f781693d99d967eed017e6909e13d4c Thu Apr 28 10:42:01 2016 -0700

• Make sure we support mirrors that don't have all (or any) of our popular species. refs #15277 note 233
  
  • src/hg/hgGateway/hgGateway.html - lines changed 1, context: html, text, full: html, text
  • src/hg/js/hgGateway.js - lines changed 22, context: html, text, full: html, text

b46a0eac56b1a6700ea6ab8b2383ed76e0b4f330 Thu Apr 28 13:17:04 2016 -0700

• Adding 'Track Search' under 'Genome Browser' menu. refs #15277 notes 227, 229
  
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 4, context: html, text, full: html, text