Commits for hiram

v332_preview2 to v332_base (2016-04-25 to 2016-05-02) v332

2a7d8d36d651b483f7624b95c494086d5595ebf5 Mon Apr 25 10:20:41 2016 -0700

• hashVal is not unique for different strings, try using md5sum refs #17168
  
  • src/utils/twoBitDup/twoBitDup.c - lines changed 6, context: html, text, full: html, text

8e274b8cb5a133c2bd0a8ce1beee06ff02b2a4fd Mon Apr 25 10:55:56 2016 -0700

• temporary change of email address while Ann is out refs #17202
  
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewReview.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/doNewReview2.csh - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/weeklybld/sendLogEmail.pl - lines changed 4, context: html, text, full: html, text

fb7ba09d6f758ef839822e3619fb8a6e3c1aa367 Mon Apr 25 12:36:18 2016 -0700

• adding galGal5 for hg38 refs #17168
  
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text

e4718f2e9088d9bdec41f57404113a91dbb818d0 Mon Apr 25 13:25:40 2016 -0700

• running up galGal5 and rheMac8 chain net refs #17168 #16744
  
  • src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 151, context: html, text, full: html, text

6c702285b9ed09c2949e1a2948443b9db619a96d Mon Apr 25 13:30:15 2016 -0700

• adding galGal5 to the composite refs #17168
  
  • src/hg/makeDb/trackDb/human/chainNetGalGal5.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetVertebrate.ra - lines changed 1, context: html, text, full: html, text

7ea02787d82801bc74a30f9069b3da61ea923217 Mon Apr 25 13:48:39 2016 -0700

• adding galGal5 to the alpha composite refs #17168
  
  • src/hg/makeDb/trackDb/mouse/mm10/chainNetGalGal4.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/chainNetGalGal5.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.previousVersionsChainNet.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra - lines changed 15, context: html, text, full: html, text

4a4dccae5a914cdd6e2288193df51f5d8a4af749 Mon Apr 25 14:08:46 2016 -0700

• updating priorities to inclue galVar1 refs #17180
  
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra - lines changed 64, context: html, text, full: html, text

b14549312cebc58411e231b00d62609026abba99 Tue Apr 26 09:50:30 2016 -0700

• adding lastz to galGal5 refs #17168
  
  • src/hg/makeDb/doc/mm10.txt - lines changed 63, context: html, text, full: html, text

b2f9f3ae77ac5e64a822b4d8bc8f0f4919880e70 Tue Apr 26 14:55:09 2016 -0700

• adding clone ends for rn6 refs #16100
  
  • src/hg/makeDb/trackDb/rat/rn6/cloneEnd.trackDb.ra - lines changed 147, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/cloneEndSuper.html - lines changed 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/trackDb.ra - lines changed 2, context: html, text, full: html, text

b307a8a5e49149e9e255b38e412f9145ebcda034 Tue Apr 26 15:01:50 2016 -0700

• clone ends done for rn6 refs #16100
  
  • src/hg/makeDb/doc/rn6.txt - lines changed 430, context: html, text, full: html, text

f076731a2fae342435567d7ac3dc2996e3e2879b Wed Apr 27 10:06:39 2016 -0700

• adding galVar1 chain net definitions refs #17180
  
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text

9e99d64d56392e795b0dfdcf59c96c042fd296a4 Wed Apr 27 10:12:34 2016 -0700

• chiLan1 is release alpha refs #8476
  
  • src/hg/makeDb/trackDb/guineaPig/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text

57d5e44e1dac1d990cbdb135f7c168f4da2f208e Wed Apr 27 10:44:39 2016 -0700

• fixup the name search rules for the cloneEndbadEnds and cloneEndmultipleMaps tables refs #16100
  
  • src/hg/makeDb/trackDb/rat/rn6/cloneEnd.trackDb.ra - lines changed 2, context: html, text, full: html, text

d4b065a0d16c08fb851cffb465a3d9d979631cc4 Thu Apr 28 13:53:17 2016 -0700

• ready to run the cluster run refs #17168
  
  • src/hg/utils/automation/doIdKeys.pl - lines changed 231, context: html, text, full: html, text

5b5f04b6df27df6b5a12bf3dbd9d87b70f1c8d29 Thu Apr 28 15:05:42 2016 -0700

• completed through cleanup step refs #17168
  
  • src/hg/utils/automation/doIdKeys.pl - lines changed 108, context: html, text, full: html, text

84aca9ec4f47c29866c97ecca57acd0ccbf6eae1 Thu Apr 28 15:07:08 2016 -0700

• adding doIdKeys.pl to the utils list refs #17168
  
  • src/hg/utils/automation/makefile - lines changed 1, context: html, text, full: html, text

9217651e6774e9963587e76f203bac2df8b7a81e Thu Apr 28 15:21:10 2016 -0700

• ready to use with doIdKeys.pl automation script refs #17168
  
  • src/utils/twoBitDup/twoBitDup.c - lines changed 6, context: html, text, full: html, text

2af610eac42f5daca0563c64823c5a8fc33ea0db Thu Apr 28 15:22:52 2016 -0700

• correct identification of duplicate message from twoBitDup refs #17168
  
  • src/hg/utils/automation/doIdKeys.pl - lines changed 1, context: html, text, full: html, text

eb792621f50a815e228ec6bfeea743cc2aa791e4 Thu Apr 28 15:34:46 2016 -0700

• correct parts.list name refs #17168
  
  • src/hg/utils/automation/doIdKeys.pl - lines changed 2, context: html, text, full: html, text

6232279cf24d7032a5e2e87776f8ec9146e2fca5 Mon May 2 10:27:15 2016 -0700

• adding dup status check refs #17168
  
  • src/hg/utils/automation/doIdKeys.pl - lines changed 4, context: html, text, full: html, text

acb438cacab3a891d74f5c5f4dc23917dfda4ebb Mon May 2 10:34:57 2016 -0700

• v332 final build refs #17202
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 4, context: html, text, full: html, text

d80445b60cff9e72fcfe51995be767f59a735a36 Mon May 2 10:36:08 2016 -0700

• New version number v332
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text