File Changes for markd

v332_preview2 to v332_base (2016-04-25 to 2016-05-02) v332

• src/hg/lib/genePred.c
  • lines changed 9, context: html, text, full: html, text
    5a54acb02ba08533f895379e2bfd42d0ef779c8e Fri Apr 29 09:45:33 2016 -0700
    improved documentation on CDS issues
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV24lift37.ra
  • lines changed 1, context: html, text, full: html, text
    6c2a52a6839a66ea22dc531d5ce3e3a8c3619b4e Fri Apr 29 12:52:20 2016 -0700
    V24lift37 doesn't have exon supports table, remove it from trackDb
    
• src/hg/utils/transMapPslToGenePred/tests/expected/codingFillTest.mapped.gp
  • lines changed 9, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 10, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 1, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/expected/fillTest.mapped.gp
  • lines changed 9, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 10, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 1, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/expected/fillTest30.mapped.gp
  • lines changed 37, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 1, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/expected/musTest.mapped.gp
  • lines changed 8, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 8, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 1, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/expected/nonCodingFillTest.mapped.gp
  • lines changed 8, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 8, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 1, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/input/musstrain.mapped.psl
  • lines changed 9, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 4, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 6, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/input/musstrain.src.gp
  • lines changed 2, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 4, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 6, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases
    
• src/hg/utils/transMapPslToGenePred/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 6, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
• src/hg/utils/transMapPslToGenePred/transMapPslToGenePred.c
  • lines changed 13, context: html, text, full: html, text
    f3406d68a298ea5b567b5d67bc05db6ecabc3b92 Tue Apr 26 12:29:03 2016 -0700
    fixed bug with merger negative strand gaps due to incorrect frame test
    
  • lines changed 13, context: html, text, full: html, text
    48c9b138b777d310591c9a4e0b3efdd768b9679d Tue Apr 26 19:11:47 2016 -0700
    fixed a bug with frame when gap filling on reverse strand
    
  • lines changed 3, context: html, text, full: html, text
    885abd78d6f56c4dbca20603d976491d3cfceddf Fri Apr 29 09:56:32 2016 -0700
    added new test cases