1716da53dd77a0138a14c6e0293f0ff7d31d3358 angie Tue Apr 12 13:17:25 2016 -0700 Adding dbDbTaxonomy.pl along with makeDb/doc instructions for generating/updating two new JS files that contain phylogenetic trees for hgwdev's and rr's species. dbDbTaxonomy.pl uses taxIds extracted from hgcentral(test) to build a phylogenetic tree using NCBI Taxonomy database dump files. It finds ancestors of the hgcentral species' taxIds to build a tree, and adds node names to ancestor nodes. It assigns priorities to nodes based on a list of 'favored species' in the order we'd like to see them listed when the tree is traversed. Then it dumps out Javascript encoding the tree as recursive Arrays. The JS output can be included as a script in HTML. refs #15277 diff --git src/hg/js/dbDbTaxonomy.hgwdev.js src/hg/js/dbDbTaxonomy.hgwdev.js new file mode 100644 index 0000000..640e9d2 --- /dev/null +++ src/hg/js/dbDbTaxonomy.hgwdev.js @@ -0,0 +1,1087 @@ +/* jshint maxlen: false, unused: false */ +var dbDbTree = ["root", 1, null, +[ ["cellular organisms", 131567, null, + [ ["Eukaryota", 2759, null, + [ ["Opisthokonta", 33154, null, + [ ["Metazoa", 33208, null, + [ ["Eumetazoa", 6072, null, + [ ["Bilateria", 33213, null, + [ ["Deuterostomia", 33511, null, + [ ["Chordata", 7711, null, + [ ["Craniata", 89593, null, + [ ["Vertebrata", 7742, null, + [ ["Gnathostomata", 7776, null, + [ ["Teleostomi", 117570, null, + [ ["Euteleostomi", 117571, null, + [ ["Sarcopterygii", 8287, null, + [ ["Dipnotetrapodomorpha", 1338369, null, + [ ["Tetrapoda", 32523, null, + [ ["Amniota", 32524, null, + [ ["Mammalia", 40674, null, + [ ["Theria", 32525, null, + [ ["Eutheria", 9347, "Eutheria", + [ ["Boreoeutheria", 1437010, null, + [ ["Euarchontoglires", 314146, "Euarchontoglires", + [ ["Primate", 9443, "Primates", + [ ["Haplorrhini", 376913, null, + [ ["Simiiformes", 314293, null, + [ ["Catarrhini", 9526, "Catarrhini", + [ ["Hominoidea", 314295, null, + [ ["Hominidae", 9604, "Hominidae", + [ ["Homininae", 207598, null, + [ ["Homo", 9605, null, + [ ["Human", 9606, "Homo sapiens" ] ] ], + ["Pan", 9596, null, + [ ["Chimp", 9598, "Pan troglodytes" ], + ["Bonobo", 9597, "Pan paniscus" ] ] ], + ["Gorilla", 9592, null, + [ ["Gorilla gorilla", 9593, null, + [ ["Gorilla", 9595, "Gorilla gorilla gorilla" ] ] ] ] ] ] ], + ["Ponginae", 607660, null, + [ ["Pongo", 9599, null, + [ ["Orangutan", 9601, "Pongo abelii" ] ] ] ] ] ] ], + ["Hylobatidae", 9577, null, + [ ["Nomascus", 325165, null, + [ ["Gibbon", 61853, "Nomascus leucogenys" ] ] ] ] ] ] ], + ["Cercopithecoidea", 314294, null, + [ ["Cercopithecidae", 9527, null, + [ ["Cercopithecinae", 9528, null, + [ ["Chlorocebus", 392815, null, + [ ["Green monkey", 60711, "Chlorocebus sabaeus" ] ] ], + ["Macaca", 9539, null, + [ ["Crab-eating macaque", 9541, "Macaca fascicularis" ], + ["Rhesus", 9544, "Macaca mulatta" ] ] ], + ["Papio", 9554, null, + [ ["Baboon (anubis)", 9555, "Papio anubis" ], + ["Papio hamadryas", 9557, null, + [ ["Baboon (hamadryas)", 9562, "Papio hamadryas hamadryas" ] ] ] ] ] ] ], + ["Colobinae", 9569, null, + [ ["Nasalis", 43779, null, + [ ["Proboscis monkey", 43780, "Nasalis larvatus" ] ] ], + ["Rhinopithecus", 542827, null, + [ ["Golden snub-nosed monkey", 61622, "Rhinopithecus roxellana" ] ] ] ] ] ] ] ] ] ] ], + ["Platyrrhini", 9479, null, + [ ["Cebidae", 9498, null, + [ ["Callitrichinae", 9480, null, + [ ["Callithrix", 9481, null, + [ ["Marmoset", 9483, "Callithrix jacchus" ] ] ] ] ], + ["Saimiriinae", 378850, null, + [ ["Saimiri", 9520, null, + [ ["Saimiri boliviensis", 27679, null, + [ ["Squirrel monkey", 39432, "Saimiri boliviensis boliviensis" ] ] ] ] ] ] ] ] ] ] ] ] ], + ["Tarsiiformes", 376912, null, + [ ["Tarsiidae", 9475, null, + [ ["Tarsius", 9476, null, + [ ["Tarsier", 9478, "Tarsius syrichta" ] ] ] ] ] ] ] ] ], + ["Strepsirrhini", 376911, null, + [ ["Lemuriformes", 376915, null, + [ ["Cheirogaleidae", 30615, null, + [ ["Microcebus", 13149, null, + [ ["Mouse lemur", 30608, "Microcebus murinus" ] ] ] ] ] ] ], + ["Lorisiformes", 376917, null, + [ ["Galagidae", 40297, null, + [ ["Otolemur", 30610, null, + [ ["Bushbaby", 30611, "Otolemur garnettii" ] ] ] ] ] ] ] ] ] ] ], + ["Glires", 314147, "Glires", + [ ["Rodentia", 9989, null, + [ ["Sciurognathi", 33553, null, + [ ["Muroidea", 337687, null, + [ ["Muridae", 10066, null, + [ ["Murinae", 39107, null, + [ ["Mus", 10088, null, + [ ["Mus", 862507, null, + [ ["Mouse", 10090, "Mus musculus" ] ] ] ] ], + ["Rattus", 10114, null, + [ ["Rat", 10116, "Rattus norvegicus" ] ] ] ] ] ] ], + ["Cricetidae", 337677, null, + [ ["Arvicolinae", 39087, null, + [ ["Microtus", 10053, null, + [ ["Prairie vole", 79684, "Microtus ochrogaster" ] ] ] ] ], + ["Cricetinae", 10026, null, + [ ["Cricetulus", 10028, null, + [ ["Chinese hamster", 10029, "Cricetulus griseus" ] ] ], + ["Mesocricetus", 10035, null, + [ ["Golden hamster", 10036, "Mesocricetus auratus" ] ] ] ] ], + ["Neotominae", 337963, null, + [ ["Peromyscus", 10040, null, + [ ["Peromyscus maniculatus", 10042, null, + [ ["Prairie deer mouse", 230844, "Peromyscus maniculatus bairdii" ] ] ] ] ] ] ] ] ], + ["Spalacidae", 337664, null, + [ ["Spalacinae", 10061, null, + [ ["Nannospalax", 30636, null, + [ ["Upper Galilee mountains blind mole rat", 1026970, "Nannospalax galili" ] ] ] ] ] ] ] ] ], + ["Dipodidae", 30648, null, + [ ["Dipodinae", 35737, null, + [ ["Jaculus", 48867, null, + [ ["Lesser Egyptian jerboa", 51337, "Jaculus jaculus" ] ] ] ] ] ] ], + ["Heteromyidae", 10015, null, + [ ["Dipodomyinae", 38662, null, + [ ["Dipodomys", 10016, null, + [ ["Kangaroo rat", 10020, "Dipodomys ordii" ] ] ] ] ] ] ], + ["Sciuridae", 55153, null, + [ ["Xerinae", 337726, null, + [ ["Marmotini", 337730, null, + [ ["Ictidomys", 1141640, null, + [ ["Squirrel", 43179, "Ictidomys tridecemlineatus" ] ] ] ] ] ] ] ] ] ] ], + ["Hystricognathi", 33550, null, + [ ["Bathyergidae", 10167, null, + [ ["Heterocephalus", 10180, null, + [ ["Naked mole-rat", 10181, "Heterocephalus glaber" ] ] ] ] ], + ["Caviidae", 10139, null, + [ ["Cavia", 10140, null, + [ ["Guinea pig", 10141, "Cavia porcellus" ] ] ] ] ], + ["Chinchillidae", 10150, null, + [ ["Chinchilla", 10151, null, + [ ["Chinchilla", 34839, "Chinchilla lanigera" ] ] ] ] ], + ["Octodontidae", 10158, null, + [ ["Octodon", 10159, null, + [ ["Brush-tailed rat", 10160, "Octodon degus" ] ] ] ] ] ] ] ] ], + ["Lagomorpha", 9975, null, + [ ["Leporidae", 9979, null, + [ ["Oryctolagus", 9984, null, + [ ["Rabbit", 9986, "Oryctolagus cuniculus" ] ] ] ] ], + ["Ochotonidae", 9976, null, + [ ["Ochotona", 9977, null, + [ ["Pika", 9978, "Ochotona princeps" ] ] ] ] ] ] ] ] ], + ["Dermoptera", 30656, null, + [ ["Cynocephalidae", 30657, null, + [ ["Galeopterus", 482536, null, + [ ["Malayan flying lemur", 482537, "Galeopterus variegatus" ] ] ] ] ] ] ], + ["Scandentia", 9392, null, + [ ["Tupaiidae", 9393, null, + [ ["Tupaia", 9394, null, + [ ["Chinese tree shrew", 246437, "Tupaia chinensis" ], + ["Tree shrew", 37347, "Tupaia belangeri" ] ] ] ] ] ] ] ] ], + ["Laurasiatheria", 314145, "Laurasiatheria", + [ ["Insectivora", 9362, null, + [ ["Erinaceidae", 9363, null, + [ ["Erinaceinae", 30577, null, + [ ["Erinaceus", 9364, null, + [ ["Hedgehog", 9365, "Erinaceus europaeus" ] ] ] ] ] ] ], + ["Soricidae", 9376, null, + [ ["Soricinae", 183663, null, + [ ["Sorex", 9379, null, + [ ["Shrew", 42254, "Sorex araneus" ] ] ] ] ] ] ], + ["Talpidae", 9373, null, + [ ["Condylura", 143301, null, + [ ["Star-nosed mole", 143302, "Condylura cristata" ] ] ] ] ] ] ], + ["Cetartiodactyla", 91561, null, + [ ["Suina", 35497, null, + [ ["Suidae", 9821, null, + [ ["Sus", 9822, null, + [ ["Pig", 9823, "Sus scrofa" ] ] ] ] ] ] ], + ["Ruminantia", 9845, null, + [ ["Pecora", 35500, null, + [ ["Bovidae", 9895, null, + [ ["Bovinae", 27592, null, + [ ["Bos", 9903, null, + [ ["Cow", 9913, "Bos taurus" ], + ["Wild yak", 72004, "Bos mutus" ] ] ], + ["Bison", 9900, null, + [ ["Bison bison", 9901, null, + [ ["Bison", 43346, "Bison bison bison" ] ] ] ] ], + ["Bubalus", 9918, null, + [ ["Water buffalo", 89462, "Bubalus bubalis" ] ] ] ] ], + ["Antilopinae", 9948, null, + [ ["Pantholops", 59537, null, + [ ["Tibetan antelope", 59538, "Pantholops hodgsonii" ] ] ] ] ], + ["Caprinae", 9963, null, + [ ["Capra", 9922, null, + [ ["Domestic goat", 9925, "Capra hircus" ] ] ], + ["Ovis", 9935, null, + [ ["Sheep", 9940, "Ovis aries" ] ] ] ] ] ] ] ] ] ] ], + ["Cetacea", 9721, null, + [ ["Odontoceti", 9722, null, + [ ["Delphinidae", 9726, null, + [ ["Orcinus", 9732, null, + [ ["Killer whale", 9733, "Orcinus orca" ] ] ], + ["Tursiops", 9738, null, + [ ["Dolphin", 9739, "Tursiops truncatus" ] ] ] ] ], + ["Lipotidae", 119500, null, + [ ["Lipotes", 118796, null, + [ ["Yangtze river dolphin", 118797, "Lipotes vexillifer" ] ] ] ] ], + ["Physeteridae", 9750, null, + [ ["Physeter", 9753, null, + [ ["Sperm whale", 9755, "Physeter catodon" ] ] ] ] ] ] ], + ["Mysticeti", 9761, null, + [ ["Balaenopteridae", 9765, null, + [ ["Balaenoptera", 9766, null, + [ ["Balaenoptera acutorostrata", 9767, null, + [ ["Minke whale", 310752, "Balaenoptera acutorostrata scammoni" ] ] ] ] ] ] ] ] ] ] ], + ["Tylopoda", 9834, null, + [ ["Camelidae", 9835, null, + [ ["Camelus", 9836, null, + [ ["Bactrian camel", 419612, "Camelus ferus" ] ] ], + ["Vicugna", 30539, null, + [ ["Alpaca", 30538, "Vicugna pacos" ] ] ] ] ] ] ] ] ], + ["Perissodactyla", 9787, null, + [ ["Equidae", 9788, null, + [ ["Equus", 9789, null, + [ ["Equus", 35510, null, + [ ["Horse", 9796, "Equus caballus" ], + ["Przewalski horse", 9798, "Equus przewalskii" ] ] ] ] ] ] ], + ["Rhinocerotidae", 9803, null, + [ ["Ceratotherium", 9806, null, + [ ["Ceratotherium simum", 9807, null, + [ ["White rhinoceros", 73337, "Ceratotherium simum simum" ] ] ] ] ] ] ] ] ], + ["Carnivora", 33554, null, + [ ["Caniformia", 379584, null, + [ ["Canidae", 9608, null, + [ ["Canis", 9611, null, + [ ["Canis lupus", 9612, null, + [ ["Dog", 9615, "Canis lupus familiaris" ] ] ] ] ] ] ], + ["Odobenidae", 9705, null, + [ ["Odobenus", 9706, null, + [ ["Odobenus rosmarus", 9707, null, + [ ["Pacific walrus", 9708, "Odobenus rosmarus divergens" ] ] ] ] ] ] ], + ["Mustelidae", 9655, null, + [ ["Mustelinae", 169418, null, + [ ["Mustela", 9665, null, + [ ["Mustela putorius", 9668, null, + [ ["Ferret", 9669, "Mustela putorius furo" ] ] ] ] ] ] ] ] ], + ["Phocidae", 9709, null, + [ ["Leptonychotes", 9712, null, + [ ["Weddell seal", 9713, "Leptonychotes weddellii" ] ] ] ] ], + ["Ursidae", 9632, null, + [ ["Ailuropoda", 9645, null, + [ ["Panda", 9646, "Ailuropoda melanoleuca" ] ] ], + ["Ursus", 9639, null, + [ ["Polar bear", 29073, "Ursus maritimus" ] ] ] ] ] ] ], + ["Feliformia", 379583, null, + [ ["Felidae", 9681, null, + [ ["Felinae", 338152, null, + [ ["Felis", 9682, null, + [ ["Cat", 9685, "Felis catus" ] ] ] ] ], + ["Pantherinae", 338153, null, + [ ["Panthera", 9688, null, + [ ["Panthera tigris", 9694, null, + [ ["Amur tiger", 74533, "Panthera tigris altaica" ] ] ] ] ] ] ] ] ] ] ] ] ], + ["Chiroptera", 9397, null, + [ ["Megachiroptera", 30559, null, + [ ["Pteropodidae", 9398, null, + [ ["Pteropodinae", 77225, null, + [ ["Pteropus", 9401, null, + [ ["Megabat", 132908, "Pteropus vampyrus" ], + ["Black flying-fox", 9402, "Pteropus alecto" ] ] ], + ["Eidolon", 58062, null, + [ ["Straw colored fruit bat", 77214, "Eidolon helvum" ] ] ] ] ] ] ] ] ], + ["Microchiroptera", 30560, null, + [ ["Megadermatidae", 9409, null, + [ ["Megaderma", 9412, null, + [ ["Indian false vampire", 9413, "Megaderma lyra" ] ] ] ] ], + ["Mormoopidae", 59445, null, + [ ["Pteronotus", 59475, null, + [ ["Parnell's mustached bat", 59476, "Pteronotus parnellii" ] ] ] ] ], + ["Rhinolophidae", 58055, null, + [ ["Rhinolophinae", 186995, null, + [ ["Rhinolophus", 49442, null, + [ ["Greater horseshoe bat", 59479, "Rhinolophus ferrumequinum" ] ] ] ] ] ] ], + ["Vespertilionidae", 9431, null, + [ ["Eptesicus", 29077, null, + [ ["Big brown bat", 29078, "Eptesicus fuscus" ] ] ], + ["Myotis", 9434, null, + [ ["Brandt's myotis (bat)", 109478, "Myotis brandtii" ], + ["David's myotis (bat)", 225400, "Myotis davidii" ], + ["Microbat", 59463, "Myotis lucifugus" ] ] ] ] ] ] ] ] ], + ["Pholidota", 9971, null, + [ ["Manidae", 9972, null, + [ ["Manis", 9973, null, + [ ["Chinese pangolin", 143292, "Manis pentadactyla" ] ] ] ] ] ] ] ] ] ] ], + ["Afrotheria", 311790, "Afrotheria", + [ ["Proboscidea", 9779, null, + [ ["Elephantidae", 9780, null, + [ ["Loxodonta", 9784, null, + [ ["Elephant", 9785, "Loxodonta africana" ] ] ] ] ] ] ], + ["Sirenia", 9774, null, + [ ["Trichechidae", 9775, null, + [ ["Trichechus", 9776, null, + [ ["Trichechus manatus", 9778, null, + [ ["Manatee", 127582, "Trichechus manatus latirostris" ] ] ] ] ] ] ] ] ], + ["Chrysochloridae", 9389, null, + [ ["Chrysochlorinae", 745257, null, + [ ["Chrysochloris", 185452, null, + [ ["Cape golden mole", 185453, "Chrysochloris asiatica" ] ] ] ] ] ] ], + ["Hyracoidea", 9810, null, + [ ["Procaviidae", 9811, null, + [ ["Procavia", 9812, null, + [ ["Rock hyrax", 9813, "Procavia capensis" ] ] ] ] ] ] ], + ["Macroscelidea", 28734, null, + [ ["Macroscelididae", 28735, null, + [ ["Elephantulus", 28736, null, + [ ["Cape elephant shrew", 28737, "Elephantulus edwardii" ] ] ] ] ] ] ], + ["Tenrecidae", 9369, null, + [ ["Tenrecinae", 176113, null, + [ ["Echinops", 9370, null, + [ ["Tenrec", 9371, "Echinops telfairi" ] ] ] ] ] ] ], + ["Tubulidentata", 9815, null, + [ ["Orycteropodidae", 9816, null, + [ ["Orycteropus", 9817, null, + [ ["Orycteropus afer", 9818, null, + [ ["Aardvark", 1230840, "Orycteropus afer afer" ] ] ] ] ] ] ] ] ] ] ], + ["Xenarthra", 9348, null, + [ ["Cingulata", 948951, null, + [ ["Dasypodidae", 9359, null, + [ ["Dasypus", 9360, null, + [ ["Armadillo", 9361, "Dasypus novemcinctus" ] ] ] ] ] ] ], + ["Pilosa", 948950, null, + [ ["Folivora", 948953, null, + [ ["Megalonychidae", 227508, null, + [ ["Choloepus", 9357, null, + [ ["Sloth", 9358, "Choloepus hoffmanni" ] ] ] ] ] ] ] ] ] ] ] ] ], + ["Metatheria", 9263, null, + [ ["Diprotodontia", 38609, null, + [ ["Macropodidae", 9307, null, + [ ["Macropus", 9312, null, + [ ["Wallaby", 9315, "Macropus eugenii" ] ] ] ] ] ] ], + ["Dasyuromorphia", 38608, null, + [ ["Dasyuridae", 9277, null, + [ ["Sarcophilus", 9304, null, + [ ["Tasmanian devil", 9305, "Sarcophilus harrisii" ] ] ] ] ] ] ], + ["Didelphimorphia", 38605, null, + [ ["Didelphidae", 9265, null, + [ ["Didelphinae", 126287, null, + [ ["Monodelphis", 13615, null, + [ ["Opossum", 13616, "Monodelphis domestica" ] ] ] ] ] ] ] ] ] ] ] ] ], + ["Prototheria", 9254, null, + [ ["Monotremata", 9255, null, + [ ["Ornithorhynchidae", 9256, null, + [ ["Ornithorhynchus", 9257, null, + [ ["Platypus", 9258, "Ornithorhynchus anatinus" ] ] ] ] ] ] ] ] ] ] ], + ["Sauropsida", 8457, null, + [ ["Sauria", 32561, null, + [ ["Archelosauria", 1329799, null, + [ ["Archosauria", 8492, null, + [ ["Dinosauria", 436486, null, + [ ["Saurischia", 436489, null, + [ ["Theropoda", 436491, null, + [ ["Coelurosauria", 436492, null, + [ ["Aves", 8782, null, + [ ["Neognathae", 8825, null, + [ ["Galloanserae", 1549675, null, + [ ["Galliformes", 8976, null, + [ ["Phasianidae", 9005, null, + [ ["Phasianinae", 9072, null, + [ ["Gallus", 9030, null, + [ ["Chicken", 9031, "Gallus gallus" ] ] ] ] ], + ["Meleagridinae", 466552, null, + [ ["Meleagris", 9102, null, + [ ["Turkey", 9103, "Meleagris gallopavo" ] ] ] ] ], + ["Perdicinae", 466544, null, + [ ["Coturnix", 9090, null, + [ ["Japanese quail", 93934, "Coturnix japonica" ] ] ] ] ] ] ] ] ], + ["Anseriformes", 8826, null, + [ ["Anatidae", 8830, null, + [ ["Anas", 8835, null, + [ ["Mallard duck", 8839, "Anas platyrhynchos" ] ] ] ] ] ] ] ] ], + ["Bucerotiformes", 57379, null, + [ ["Bucerotidae", 57380, null, + [ ["Buceros", 175829, null, + [ ["Buceros rhinoceros", 175835, null, + [ ["Rhinoceros hornbill", 175836, "Buceros rhinoceros silvestris" ] ] ] ] ] ] ] ] ], + ["Caprimulgiformes", 8902, null, + [ ["Caprimulgidae", 48283, null, + [ ["Caprimulginae", 48286, null, + [ ["Caprimulgus", 48284, null, + [ ["Chuck-will's-widow", 279965, "Caprimulgus carolinensis" ] ] ] ] ] ] ] ] ], + ["Charadriiformes", 8906, null, + [ ["Charadriidae", 8907, null, + [ ["Charadrius", 50391, null, + [ ["Killdeer", 50402, "Charadrius vociferus" ] ] ] ] ] ] ], + ["Ciconiiformes", 8920, null, + [ ["Pteroclidae", 56295, null, + [ ["Pterocles", 56296, null, + [ ["Yellow-throated sandgrouse", 240206, "Pterocles gutturalis" ] ] ] ] ] ] ], + ["Coliiformes", 57384, null, + [ ["Coliidae", 57385, null, + [ ["Colius", 57409, null, + [ ["Speckled mousebird", 57412, "Colius striatus" ] ] ] ] ] ] ], + ["Columbiformes", 8929, null, + [ ["Columbidae", 8930, null, + [ ["Columba", 8931, null, + [ ["Rock pigeon", 8932, "Columba livia" ] ] ] ] ] ] ], + ["Coraciiformes", 8936, null, + [ ["Leptosomidae", 188342, null, + [ ["Leptosomus", 188343, null, + [ ["Cuckoo roller", 188344, "Leptosomus discolor" ] ] ] ] ], + ["Meropidae", 57386, null, + [ ["Merops", 57420, null, + [ ["Northern carmine bee-eater", 57421, "Merops nubicus" ] ] ] ] ] ] ], + ["Cuculiformes", 8940, null, + [ ["Cuculidae", 8941, null, + [ ["Cuculus", 33592, null, + [ ["Common cuckoo", 55661, "Cuculus canorus" ] ] ] ] ] ] ], + ["Falconiformes", 8948, null, + [ ["Accipitridae", 56259, null, + [ ["Accipitrinae", 8955, null, + [ ["Aquila", 8960, null, + [ ["Aquila chrysaetos", 8962, null, + [ ["Golden eagle", 216574, "Aquila chrysaetos canadensis" ] ] ] ] ], + ["Haliaeetus", 8968, null, + [ ["Bald eagle", 52644, "Haliaeetus leucocephalus" ], + ["White-tailed eagle", 8969, "Haliaeetus albicilla" ] ] ] ] ] ] ], + ["Falconidae", 8949, null, + [ ["Falco", 8952, null, + [ ["Peregrine falcon", 8954, "Falco peregrinus" ], + ["Saker falcon", 345164, "Falco cherrug" ] ] ] ] ] ] ], + ["Gaviiformes", 30411, null, + [ ["Gaviidae", 30412, null, + [ ["Gavia", 37038, null, + [ ["Red-throated loon", 37040, "Gavia stellata" ] ] ] ] ] ] ], + ["Gruiformes", 9108, null, + [ ["Cariamidae", 54378, null, + [ ["Cariama", 54379, null, + [ ["Red-legged seriema", 54380, "Cariama cristata" ] ] ] ] ], + ["Eurypygidae", 54381, null, + [ ["Eurypyga", 54382, null, + [ ["Sunbittern", 54383, "Eurypyga helias" ] ] ] ] ], + ["Gruidae", 9109, null, + [ ["Balearica", 30413, null, + [ ["Balearica regulorum", 925459, null, + [ ["Crowned crain", 100784, "Balearica regulorum gibbericeps" ] ] ] ] ] ] ], + ["Mesitornithidae", 54372, null, + [ ["Mesitornis", 54373, null, + [ ["Brown roatelo", 54374, "Mesitornis unicolor" ] ] ] ] ], + ["Otididae", 54375, null, + [ ["Chlamydotis", 172679, null, + [ ["Houbara bustard", 187382, "Chlamydotis macqueenii" ] ] ] ] ] ] ], + ["Musophagiformes", 56301, null, + [ ["Musophagidae", 56302, null, + [ ["Tauraco", 56303, null, + [ ["Red crested turaco", 121530, "Tauraco erythrolophus" ] ] ] ] ] ] ], + ["Opisthocomiformes", 30416, null, + [ ["Opisthocomidae", 30417, null, + [ ["Opisthocomus", 30418, null, + [ ["Hoatzin", 30419, "Opisthocomus hoazin" ] ] ] ] ] ] ], + ["Passeriformes", 9126, null, + [ ["Acanthisittidae", 38633, null, + [ ["Acanthisitta", 57067, null, + [ ["Rifleman", 57068, "Acanthisitta chloris" ] ] ] ] ], + ["Corvoidea", 192204, null, + [ ["Corvidae", 28725, null, + [ ["Corvus", 30420, null, + [ ["American crow", 85066, "Corvus brachyrhynchos" ], + ["Corvus cornix", 181096, null, + [ ["Hooded crow", 932674, "Corvus cornix cornix" ] ] ] ] ] ] ] ] ], + ["Muscicapidae", 36291, null, + [ ["Ficedula", 36292, null, + [ ["Collared flycatcher", 59894, "Ficedula albicollis" ] ] ] ] ], + ["Paridae", 9153, null, + [ ["Pseudopodoces", 181118, null, + [ ["Tibetan ground jay", 181119, "Pseudopodoces humilis" ] ] ] ] ], + ["Passerellidae", 1729112, null, + [ ["Zonotrichia", 44387, null, + [ ["White-throated 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