7e5c73375ec879890233ed77f22a52fb2f82d9ba
angie
  Wed Jan 27 13:48:51 2016 -0800
Adding taxId column to dbDb.{as,c,h,sql} -- the column seems to have been
in our dbDb tables for years, just not in these files.

diff --git src/hg/inc/dbDb.h src/hg/inc/dbDb.h
index e3d23ac..b8ec308 100644
--- src/hg/inc/dbDb.h
+++ src/hg/inc/dbDb.h
@@ -1,76 +1,79 @@
 /* dbDb.h was originally generated by the autoSql program, which also 
  * generated dbDb.c and dbDb.sql.  This header links the database and
  * the RAM representation of objects. */
 
-/* Copyright (C) 2004 The Regents of the University of California 
+/* Copyright (C) 2004, 2016 The Regents of the University of California
  * See README in this or parent directory for licensing information. */
 
 #ifndef DBDB_H
 #define DBDB_H
 
-#define DBDB_NUM_COLS 13
+#define DBDB_NUM_COLS 14
+
+extern char *dbDbCommaSepFieldNames;
 
 struct dbDb
 /* Description of annotation database */
     {
     struct dbDb *next;  /* Next in singly linked list. */
     char *name;	/* Short name of database.  'hg8' or the like */
     char *description;	/* Short description - 'Aug. 8, 2001' or the like */
     char *nibPath;	/* Path to packed sequence files */
     char *organism;	/* Common name of organism - first letter capitalized */
     char *defaultPos;	/* Default starting position */
     int active;	/* Flag indicating whether this db is in active use */
     int orderKey;	/* Int used to control display order within a genome */
     char *genome;	/* Unifying genome collection to which an assembly belongs */
     char *scientificName;	/* Genus and species of the organism; e.g. Homo sapiens */
     char *htmlPath;	/* path in /gbdb for assembly description */
     signed char hgNearOk;	/* Have hgNear for this? */
     signed char hgPbOk;	/* Have pbTracks for this? */
     char *sourceName;	/* Source build/release/version of the assembly */
+    int taxId;	/* NCBI Taxonomy ID for genome */
     };
 
 void dbDbStaticLoad(char **row, struct dbDb *ret);
 /* Load a row from dbDb table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct dbDb *dbDbLoad(char **row);
 /* Load a dbDb from row fetched with select * from dbDb
  * from database.  Dispose of this with dbDbFree(). */
 
 struct dbDb *dbDbLoadAll(char *fileName);
 /* Load all dbDb from whitespace-separated file.
  * Dispose of this with dbDbFreeList(). */
 
 struct dbDb *dbDbLoadAllByChar(char *fileName, char chopper);
 /* Load all dbDb from chopper separated file.
  * Dispose of this with dbDbFreeList(). */
 
 #define dbDbLoadAllByTab(a) dbDbLoadAllByChar(a, '\t');
 /* Load all dbDb from tab separated file.
  * Dispose of this with dbDbFreeList(). */
 
 struct dbDb *dbDbCommaIn(char **pS, struct dbDb *ret);
 /* Create a dbDb out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new dbDb */
 
 void dbDbFree(struct dbDb **pEl);
 /* Free a single dynamically allocated dbDb such as created
  * with dbDbLoad(). */
 
 void dbDbFreeList(struct dbDb **pList);
 /* Free a list of dynamically allocated dbDb's */
 
 void dbDbOutput(struct dbDb *el, FILE *f, char sep, char lastSep);
 /* Print out dbDb.  Separate fields with sep. Follow last field with lastSep. */
 
 #define dbDbTabOut(el,f) dbDbOutput(el,f,'\t','\n');
 /* Print out dbDb as a line in a tab-separated file. */
 
 #define dbDbCommaOut(el,f) dbDbOutput(el,f,',',',');
 /* Print out dbDb as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* DBDB_H */