915f56e3f34f66d58bf6573dc4dfddd068bd4090
angie
Tue Apr 19 13:36:48 2016 -0700
Simplify the generation of hgGateway's dbDbTaxonomy tree info and support mirrors better: new hg.conf setting hgGateway.dbDbTaxonomy enables tree display and specifies relative URL to file. Instead of dbDbTaxonomy.{hgwdev,rr}.js, there is only one dbDbTaxonomy.js, built from hgcentraltest (hgwdev). hgGateway.c's HTML output includes JS encoding the set of active genomes+taxIds. hgGateway.js uses that to prune the tree so it contains only active genomes; now we can use the hgwdev tree on the RR and see only RR species. Also updated dbDbTaxonomy.js to get the latest hgwdev species as of 4/18/16.
refs #15277
diff --git src/hg/js/dbDbTaxonomy.js src/hg/js/dbDbTaxonomy.js
new file mode 100644
index 0000000..037e7ed
--- /dev/null
+++ src/hg/js/dbDbTaxonomy.js
@@ -0,0 +1,1089 @@
+/* jshint maxlen: false, unused: false */
+var dbDbTree = ["root", 1, null,
+[ ["cellular organisms", 131567, null,
+ [ ["Eukaryota", 2759, null,
+ [ ["Opisthokonta", 33154, null,
+ [ ["Metazoa", 33208, null,
+ [ ["Eumetazoa", 6072, null,
+ [ ["Bilateria", 33213, null,
+ [ ["Deuterostomia", 33511, null,
+ [ ["Chordata", 7711, null,
+ [ ["Craniata", 89593, null,
+ [ ["Vertebrata", 7742, null,
+ [ ["Gnathostomata", 7776, null,
+ [ ["Teleostomi", 117570, null,
+ [ ["Euteleostomi", 117571, null,
+ [ ["Sarcopterygii", 8287, null,
+ [ ["Dipnotetrapodomorpha", 1338369, null,
+ [ ["Tetrapoda", 32523, null,
+ [ ["Amniota", 32524, null,
+ [ ["Mammalia", 40674, null,
+ [ ["Theria", 32525, null,
+ [ ["Eutheria", 9347, "Eutheria",
+ [ ["Boreoeutheria", 1437010, null,
+ [ ["Euarchontoglires", 314146, "Euarchontoglires",
+ [ ["Primate", 9443, "Primates",
+ [ ["Haplorrhini", 376913, null,
+ [ ["Simiiformes", 314293, null,
+ [ ["Catarrhini", 9526, "Catarrhini",
+ [ ["Hominoidea", 314295, null,
+ [ ["Hominidae", 9604, "Hominidae",
+ [ ["Homininae", 207598, null,
+ [ ["Homo", 9605, null,
+ [ ["Human", 9606, "Homo sapiens" ] ] ],
+ ["Pan", 9596, null,
+ [ ["Chimp", 9598, "Pan troglodytes" ],
+ ["Bonobo", 9597, "Pan paniscus" ] ] ],
+ ["Gorilla", 9592, null,
+ [ ["Gorilla gorilla", 9593, null,
+ [ ["Gorilla", 9595, "Gorilla gorilla gorilla" ] ] ] ] ] ] ],
+ ["Ponginae", 607660, null,
+ [ ["Pongo", 9599, null,
+ [ ["Orangutan", 9601, "Pongo abelii" ] ] ] ] ] ] ],
+ ["Hylobatidae", 9577, null,
+ [ ["Nomascus", 325165, null,
+ [ ["Gibbon", 61853, "Nomascus leucogenys" ] ] ] ] ] ] ],
+ ["Cercopithecoidea", 314294, null,
+ [ ["Cercopithecidae", 9527, null,
+ [ ["Cercopithecinae", 9528, null,
+ [ ["Chlorocebus", 392815, null,
+ [ ["Green monkey", 60711, "Chlorocebus sabaeus" ] ] ],
+ ["Macaca", 9539, null,
+ [ ["Crab-eating macaque", 9541, "Macaca fascicularis" ],
+ ["Rhesus", 9544, "Macaca mulatta" ] ] ],
+ ["Papio", 9554, null,
+ [ ["Baboon (anubis)", 9555, "Papio anubis" ],
+ ["Papio hamadryas", 9557, null,
+ [ ["Baboon (hamadryas)", 9562, "Papio hamadryas hamadryas" ] ] ] ] ] ] ],
+ ["Colobinae", 9569, null,
+ [ ["Nasalis", 43779, null,
+ [ ["Proboscis monkey", 43780, "Nasalis larvatus" ] ] ],
+ ["Rhinopithecus", 542827, null,
+ [ ["Golden snub-nosed monkey", 61622, "Rhinopithecus roxellana" ] ] ] ] ] ] ] ] ] ] ],
+ ["Platyrrhini", 9479, null,
+ [ ["Cebidae", 9498, null,
+ [ ["Callitrichinae", 9480, null,
+ [ ["Callithrix", 9481, null,
+ [ ["Marmoset", 9483, "Callithrix jacchus" ] ] ] ] ],
+ ["Saimiriinae", 378850, null,
+ [ ["Saimiri", 9520, null,
+ [ ["Saimiri boliviensis", 27679, null,
+ [ ["Squirrel monkey", 39432, "Saimiri boliviensis boliviensis" ] ] ] ] ] ] ] ] ] ] ] ] ],
+ ["Tarsiiformes", 376912, null,
+ [ ["Tarsiidae", 9475, null,
+ [ ["Tarsius", 9476, null,
+ [ ["Tarsier", 9478, "Tarsius syrichta" ] ] ] ] ] ] ] ] ],
+ ["Strepsirrhini", 376911, null,
+ [ ["Lemuriformes", 376915, null,
+ [ ["Cheirogaleidae", 30615, null,
+ [ ["Microcebus", 13149, null,
+ [ ["Mouse lemur", 30608, "Microcebus murinus" ] ] ] ] ] ] ],
+ ["Lorisiformes", 376917, null,
+ [ ["Galagidae", 40297, null,
+ [ ["Otolemur", 30610, null,
+ [ ["Bushbaby", 30611, "Otolemur garnettii" ] ] ] ] ] ] ] ] ] ] ],
+ ["Glires", 314147, "Glires",
+ [ ["Rodentia", 9989, null,
+ [ ["Sciurognathi", 33553, null,
+ [ ["Muroidea", 337687, null,
+ [ ["Muridae", 10066, null,
+ [ ["Murinae", 39107, null,
+ [ ["Mus", 10088, null,
+ [ ["Mus", 862507, null,
+ [ ["Mouse", 10090, "Mus musculus" ] ] ] ] ],
+ ["Rattus", 10114, null,
+ [ ["Rat", 10116, "Rattus norvegicus" ] ] ] ] ] ] ],
+ ["Cricetidae", 337677, null,
+ [ ["Arvicolinae", 39087, null,
+ [ ["Microtus", 10053, null,
+ [ ["Prairie vole", 79684, "Microtus ochrogaster" ] ] ] ] ],
+ ["Cricetinae", 10026, null,
+ [ ["Cricetulus", 10028, null,
+ [ ["Chinese hamster", 10029, "Cricetulus griseus" ] ] ],
+ ["Mesocricetus", 10035, null,
+ [ ["Golden hamster", 10036, "Mesocricetus auratus" ] ] ] ] ],
+ ["Neotominae", 337963, null,
+ [ ["Peromyscus", 10040, null,
+ [ ["Peromyscus maniculatus", 10042, null,
+ [ ["Prairie deer mouse", 230844, "Peromyscus maniculatus bairdii" ] ] ] ] ] ] ] ] ],
+ ["Spalacidae", 337664, null,
+ [ ["Spalacinae", 10061, null,
+ [ ["Nannospalax", 30636, null,
+ [ ["Upper Galilee mountains blind mole rat", 1026970, "Nannospalax galili" ] ] ] ] ] ] ] ] ],
+ ["Dipodidae", 30648, null,
+ [ ["Dipodinae", 35737, null,
+ [ ["Jaculus", 48867, null,
+ [ ["Lesser Egyptian jerboa", 51337, "Jaculus jaculus" ] ] ] ] ] ] ],
+ ["Heteromyidae", 10015, null,
+ [ ["Dipodomyinae", 38662, null,
+ [ ["Dipodomys", 10016, null,
+ [ ["Kangaroo rat", 10020, "Dipodomys ordii" ] ] ] ] ] ] ],
+ ["Sciuridae", 55153, null,
+ [ ["Xerinae", 337726, null,
+ [ ["Marmotini", 337730, null,
+ [ ["Ictidomys", 1141640, null,
+ [ ["Squirrel", 43179, "Ictidomys tridecemlineatus" ] ] ] ] ] ] ] ] ] ] ],
+ ["Hystricognathi", 33550, null,
+ [ ["Bathyergidae", 10167, null,
+ [ ["Heterocephalus", 10180, null,
+ [ ["Naked mole-rat", 10181, "Heterocephalus glaber" ] ] ] ] ],
+ ["Caviidae", 10139, null,
+ [ ["Cavia", 10140, null,
+ [ ["Guinea pig", 10141, "Cavia porcellus" ] ] ] ] ],
+ ["Chinchillidae", 10150, null,
+ [ ["Chinchilla", 10151, null,
+ [ ["Chinchilla", 34839, "Chinchilla lanigera" ] ] ] ] ],
+ ["Octodontidae", 10158, null,
+ [ ["Octodon", 10159, null,
+ [ ["Brush-tailed rat", 10160, "Octodon degus" ] ] ] ] ] ] ] ] ],
+ ["Lagomorpha", 9975, null,
+ [ ["Leporidae", 9979, null,
+ [ ["Oryctolagus", 9984, null,
+ [ ["Rabbit", 9986, "Oryctolagus cuniculus" ] ] ] ] ],
+ ["Ochotonidae", 9976, null,
+ [ ["Ochotona", 9977, null,
+ [ ["Pika", 9978, "Ochotona princeps" ] ] ] ] ] ] ] ] ],
+ ["Dermoptera", 30656, null,
+ [ ["Cynocephalidae", 30657, null,
+ [ ["Galeopterus", 482536, null,
+ [ ["Malayan flying lemur", 482537, "Galeopterus variegatus" ] ] ] ] ] ] ],
+ ["Scandentia", 9392, null,
+ [ ["Tupaiidae", 9393, null,
+ [ ["Tupaia", 9394, null,
+ [ ["Chinese tree shrew", 246437, "Tupaia chinensis" ],
+ ["Tree shrew", 37347, "Tupaia belangeri" ] ] ] ] ] ] ] ] ],
+ ["Laurasiatheria", 314145, "Laurasiatheria",
+ [ ["Insectivora", 9362, null,
+ [ ["Erinaceidae", 9363, null,
+ [ ["Erinaceinae", 30577, null,
+ [ ["Erinaceus", 9364, null,
+ [ ["Hedgehog", 9365, "Erinaceus europaeus" ] ] ] ] ] ] ],
+ ["Soricidae", 9376, null,
+ [ ["Soricinae", 183663, null,
+ [ ["Sorex", 9379, null,
+ [ ["Shrew", 42254, "Sorex araneus" ] ] ] ] ] ] ],
+ ["Talpidae", 9373, null,
+ [ ["Condylura", 143301, null,
+ [ ["Star-nosed mole", 143302, "Condylura cristata" ] ] ] ] ] ] ],
+ ["Cetartiodactyla", 91561, null,
+ [ ["Suina", 35497, null,
+ [ ["Suidae", 9821, null,
+ [ ["Sus", 9822, null,
+ [ ["Pig", 9823, "Sus scrofa" ] ] ] ] ] ] ],
+ ["Ruminantia", 9845, null,
+ [ ["Pecora", 35500, null,
+ [ ["Bovidae", 9895, null,
+ [ ["Bovinae", 27592, null,
+ [ ["Bos", 9903, null,
+ [ ["Cow", 9913, "Bos taurus" ],
+ ["Wild yak", 72004, "Bos mutus" ] ] ],
+ ["Bison", 9900, null,
+ [ ["Bison bison", 9901, null,
+ [ ["Bison", 43346, "Bison bison bison" ] ] ] ] ],
+ ["Bubalus", 9918, null,
+ [ ["Water buffalo", 89462, "Bubalus bubalis" ] ] ] ] ],
+ ["Antilopinae", 9948, null,
+ [ ["Pantholops", 59537, null,
+ [ ["Tibetan antelope", 59538, "Pantholops hodgsonii" ] ] ] ] ],
+ ["Caprinae", 9963, null,
+ [ ["Capra", 9922, null,
+ [ ["Domestic goat", 9925, "Capra hircus" ] ] ],
+ ["Ovis", 9935, null,
+ [ ["Sheep", 9940, "Ovis aries" ] ] ] ] ] ] ] ] ] ] ],
+ ["Cetacea", 9721, null,
+ [ ["Odontoceti", 9722, null,
+ [ ["Delphinidae", 9726, null,
+ [ ["Orcinus", 9732, null,
+ [ ["Killer whale", 9733, "Orcinus orca" ] ] ],
+ ["Tursiops", 9738, null,
+ [ ["Dolphin", 9739, "Tursiops truncatus" ] ] ] ] ],
+ ["Lipotidae", 119500, null,
+ [ ["Lipotes", 118796, null,
+ [ ["Yangtze river dolphin", 118797, "Lipotes vexillifer" ] ] ] ] ],
+ ["Physeteridae", 9750, null,
+ [ ["Physeter", 9753, null,
+ [ ["Sperm whale", 9755, "Physeter catodon" ] ] ] ] ] ] ],
+ ["Mysticeti", 9761, null,
+ [ ["Balaenopteridae", 9765, null,
+ [ ["Balaenoptera", 9766, null,
+ [ ["Balaenoptera acutorostrata", 9767, null,
+ [ ["Minke whale", 310752, "Balaenoptera acutorostrata scammoni" ] ] ] ] ] ] ] ] ] ] ],
+ ["Tylopoda", 9834, null,
+ [ ["Camelidae", 9835, null,
+ [ ["Camelus", 9836, null,
+ [ ["Bactrian camel", 419612, "Camelus ferus" ] ] ],
+ ["Vicugna", 30539, null,
+ [ ["Alpaca", 30538, "Vicugna pacos" ] ] ] ] ] ] ] ] ],
+ ["Perissodactyla", 9787, null,
+ [ ["Equidae", 9788, null,
+ [ ["Equus", 9789, null,
+ [ ["Equus", 35510, null,
+ [ ["Horse", 9796, "Equus caballus" ],
+ ["Przewalski horse", 9798, "Equus przewalskii" ] ] ] ] ] ] ],
+ ["Rhinocerotidae", 9803, null,
+ [ ["Ceratotherium", 9806, null,
+ [ ["Ceratotherium simum", 9807, null,
+ [ ["White rhinoceros", 73337, "Ceratotherium simum simum" ] ] ] ] ] ] ] ] ],
+ ["Carnivora", 33554, null,
+ [ ["Caniformia", 379584, null,
+ [ ["Canidae", 9608, null,
+ [ ["Canis", 9611, null,
+ [ ["Canis lupus", 9612, null,
+ [ ["Dog", 9615, "Canis lupus familiaris" ] ] ] ] ] ] ],
+ ["Odobenidae", 9705, null,
+ [ ["Odobenus", 9706, null,
+ [ ["Odobenus rosmarus", 9707, null,
+ [ ["Pacific walrus", 9708, "Odobenus rosmarus divergens" ] ] ] ] ] ] ],
+ ["Mustelidae", 9655, null,
+ [ ["Mustelinae", 169418, null,
+ [ ["Mustela", 9665, null,
+ [ ["Mustela putorius", 9668, null,
+ [ ["Ferret", 9669, "Mustela putorius furo" ] ] ] ] ] ] ] ] ],
+ ["Phocidae", 9709, null,
+ [ ["Leptonychotes", 9712, null,
+ [ ["Weddell seal", 9713, "Leptonychotes weddellii" ] ] ] ] ],
+ ["Ursidae", 9632, null,
+ [ ["Ailuropoda", 9645, null,
+ [ ["Panda", 9646, "Ailuropoda melanoleuca" ] ] ],
+ ["Ursus", 9639, null,
+ [ ["Polar bear", 29073, "Ursus maritimus" ] ] ] ] ] ] ],
+ ["Feliformia", 379583, null,
+ [ ["Felidae", 9681, null,
+ [ ["Felinae", 338152, null,
+ [ ["Felis", 9682, null,
+ [ ["Cat", 9685, "Felis catus" ] ] ] ] ],
+ ["Pantherinae", 338153, null,
+ [ ["Panthera", 9688, null,
+ [ ["Panthera tigris", 9694, null,
+ [ ["Amur tiger", 74533, "Panthera tigris altaica" ] ] ] ] ] ] ] ] ] ] ] ] ],
+ ["Chiroptera", 9397, null,
+ [ ["Megachiroptera", 30559, null,
+ [ ["Pteropodidae", 9398, null,
+ [ ["Pteropodinae", 77225, null,
+ [ ["Pteropus", 9401, null,
+ [ ["Megabat", 132908, "Pteropus vampyrus" ],
+ ["Black flying-fox", 9402, "Pteropus alecto" ] ] ],
+ ["Eidolon", 58062, null,
+ [ ["Straw colored fruit bat", 77214, "Eidolon helvum" ] ] ],
+ ["Rousettus", 9406, null,
+ [ ["Egyptian rousette", 9407, "Rousettus aegyptiacus" ] ] ] ] ] ] ] ] ],
+ ["Microchiroptera", 30560, null,
+ [ ["Megadermatidae", 9409, null,
+ [ ["Megaderma", 9412, null,
+ [ ["Indian false vampire", 9413, "Megaderma lyra" ] ] ] ] ],
+ ["Mormoopidae", 59445, null,
+ [ ["Pteronotus", 59475, null,
+ [ ["Parnell's mustached bat", 59476, "Pteronotus parnellii" ] ] ] ] ],
+ ["Rhinolophidae", 58055, null,
+ [ ["Rhinolophinae", 186995, null,
+ [ ["Rhinolophus", 49442, null,
+ [ ["Greater horseshoe bat", 59479, "Rhinolophus ferrumequinum" ] ] ] ] ] ] ],
+ ["Vespertilionidae", 9431, null,
+ [ ["Eptesicus", 29077, null,
+ [ ["Big brown bat", 29078, "Eptesicus fuscus" ] ] ],
+ ["Myotis", 9434, null,
+ [ ["Brandt's myotis (bat)", 109478, "Myotis brandtii" ],
+ ["David's myotis (bat)", 225400, "Myotis davidii" ],
+ ["Microbat", 59463, "Myotis lucifugus" ] ] ] ] ] ] ] ] ],
+ ["Pholidota", 9971, null,
+ [ ["Manidae", 9972, null,
+ [ ["Manis", 9973, null,
+ [ ["Chinese pangolin", 143292, "Manis pentadactyla" ] ] ] ] ] ] ] ] ] ] ],
+ ["Afrotheria", 311790, "Afrotheria",
+ [ ["Proboscidea", 9779, null,
+ [ ["Elephantidae", 9780, null,
+ [ ["Loxodonta", 9784, null,
+ [ ["Elephant", 9785, "Loxodonta africana" ] ] ] ] ] ] ],
+ ["Sirenia", 9774, null,
+ [ ["Trichechidae", 9775, null,
+ [ ["Trichechus", 9776, null,
+ [ ["Trichechus manatus", 9778, null,
+ [ ["Manatee", 127582, "Trichechus manatus latirostris" ] ] ] ] ] ] ] ] ],
+ ["Chrysochloridae", 9389, null,
+ [ ["Chrysochlorinae", 745257, null,
+ [ ["Chrysochloris", 185452, null,
+ [ ["Cape golden mole", 185453, "Chrysochloris asiatica" ] ] ] ] ] ] ],
+ ["Hyracoidea", 9810, null,
+ [ ["Procaviidae", 9811, null,
+ [ ["Procavia", 9812, null,
+ [ ["Rock hyrax", 9813, "Procavia capensis" ] ] ] ] ] ] ],
+ ["Macroscelidea", 28734, null,
+ [ ["Macroscelididae", 28735, null,
+ [ ["Elephantulus", 28736, null,
+ [ ["Cape elephant shrew", 28737, "Elephantulus edwardii" ] ] ] ] ] ] ],
+ ["Tenrecidae", 9369, null,
+ [ ["Tenrecinae", 176113, null,
+ [ ["Echinops", 9370, null,
+ [ ["Tenrec", 9371, "Echinops telfairi" ] ] ] ] ] ] ],
+ ["Tubulidentata", 9815, null,
+ [ ["Orycteropodidae", 9816, null,
+ [ ["Orycteropus", 9817, null,
+ [ ["Orycteropus afer", 9818, null,
+ [ ["Aardvark", 1230840, "Orycteropus afer afer" ] ] ] ] ] ] ] ] ] ] ],
+ ["Xenarthra", 9348, null,
+ [ ["Cingulata", 948951, null,
+ [ ["Dasypodidae", 9359, null,
+ [ ["Dasypus", 9360, null,
+ [ ["Armadillo", 9361, "Dasypus novemcinctus" ] ] ] ] ] ] ],
+ ["Pilosa", 948950, null,
+ [ ["Folivora", 948953, null,
+ [ ["Megalonychidae", 227508, null,
+ [ ["Choloepus", 9357, null,
+ [ ["Sloth", 9358, "Choloepus hoffmanni" ] ] ] ] ] ] ] ] ] ] ] ] ],
+ ["Metatheria", 9263, null,
+ [ ["Diprotodontia", 38609, null,
+ [ ["Macropodidae", 9307, null,
+ [ ["Macropus", 9312, null,
+ [ ["Wallaby", 9315, "Macropus eugenii" ] ] ] ] ] ] ],
+ ["Dasyuromorphia", 38608, null,
+ [ ["Dasyuridae", 9277, null,
+ [ ["Sarcophilus", 9304, null,
+ [ ["Tasmanian devil", 9305, "Sarcophilus harrisii" ] ] ] ] ] ] ],
+ ["Didelphimorphia", 38605, null,
+ [ ["Didelphidae", 9265, null,
+ [ ["Didelphinae", 126287, null,
+ [ ["Monodelphis", 13615, null,
+ [ ["Opossum", 13616, "Monodelphis domestica" ] ] ] ] ] ] ] ] ] ] ] ] ],
+ ["Prototheria", 9254, null,
+ [ ["Monotremata", 9255, null,
+ [ ["Ornithorhynchidae", 9256, null,
+ [ ["Ornithorhynchus", 9257, null,
+ [ ["Platypus", 9258, "Ornithorhynchus anatinus" ] ] ] ] ] ] ] ] ] ] ],
+ ["Sauropsida", 8457, null,
+ [ ["Sauria", 32561, null,
+ [ ["Archelosauria", 1329799, null,
+ [ ["Archosauria", 8492, null,
+ [ ["Dinosauria", 436486, null,
+ [ ["Saurischia", 436489, null,
+ [ ["Theropoda", 436491, null,
+ [ ["Coelurosauria", 436492, null,
+ [ ["Aves", 8782, null,
+ [ ["Neognathae", 8825, null,
+ [ ["Galloanserae", 1549675, null,
+ [ ["Galliformes", 8976, null,
+ [ ["Phasianidae", 9005, null,
+ [ ["Phasianinae", 9072, null,
+ [ ["Gallus", 9030, null,
+ [ ["Chicken", 9031, "Gallus gallus" ] ] ] ] ],
+ ["Meleagridinae", 466552, null,
+ [ ["Meleagris", 9102, null,
+ [ ["Turkey", 9103, "Meleagris gallopavo" ] ] ] ] ],
+ ["Perdicinae", 466544, null,
+ [ ["Coturnix", 9090, null,
+ [ ["Japanese quail", 93934, "Coturnix japonica" ] ] ] ] ] ] ] ] ],
+ ["Anseriformes", 8826, null,
+ [ ["Anatidae", 8830, null,
+ [ ["Anas", 8835, null,
+ [ ["Mallard duck", 8839, "Anas platyrhynchos" ] ] ] ] ] ] ] ] ],
+ ["Bucerotiformes", 57379, null,
+ [ ["Bucerotidae", 57380, null,
+ [ ["Buceros", 175829, null,
+ [ ["Buceros rhinoceros", 175835, null,
+ [ ["Rhinoceros hornbill", 175836, "Buceros rhinoceros silvestris" ] ] ] ] ] ] ] ] ],
+ ["Caprimulgiformes", 8902, null,
+ [ ["Caprimulgidae", 48283, null,
+ [ ["Caprimulginae", 48286, null,
+ [ ["Caprimulgus", 48284, null,
+ [ ["Chuck-will's-widow", 279965, "Caprimulgus carolinensis" ] ] ] ] ] ] ] ] ],
+ ["Charadriiformes", 8906, null,
+ [ ["Charadriidae", 8907, null,
+ [ ["Charadrius", 50391, null,
+ [ ["Killdeer", 50402, "Charadrius vociferus" ] ] ] ] ] ] ],
+ ["Ciconiiformes", 8920, null,
+ [ ["Pteroclidae", 56295, null,
+ [ ["Pterocles", 56296, null,
+ [ ["Yellow-throated sandgrouse", 240206, "Pterocles gutturalis" ] ] ] ] ] ] ],
+ ["Coliiformes", 57384, null,
+ [ ["Coliidae", 57385, null,
+ [ ["Colius", 57409, null,
+ [ ["Speckled mousebird", 57412, "Colius striatus" ] ] ] ] ] ] ],
+ ["Columbiformes", 8929, null,
+ [ ["Columbidae", 8930, null,
+ [ ["Columba", 8931, null,
+ [ ["Rock pigeon", 8932, "Columba livia" ] ] ] ] ] ] ],
+ ["Coraciiformes", 8936, null,
+ [ ["Leptosomidae", 188342, null,
+ [ ["Leptosomus", 188343, null,
+ [ ["Cuckoo roller", 188344, "Leptosomus discolor" ] ] ] ] ],
+ ["Meropidae", 57386, null,
+ [ ["Merops", 57420, null,
+ [ ["Northern carmine bee-eater", 57421, "Merops nubicus" ] ] ] ] ] ] ],
+ ["Cuculiformes", 8940, null,
+ [ ["Cuculidae", 8941, null,
+ [ ["Cuculus", 33592, null,
+ [ ["Common cuckoo", 55661, "Cuculus canorus" ] ] ] ] ] ] ],
+ ["Falconiformes", 8948, null,
+ [ ["Accipitridae", 56259, null,
+ [ ["Accipitrinae", 8955, null,
+ [ ["Aquila", 8960, null,
+ [ ["Aquila chrysaetos", 8962, null,
+ [ ["Golden eagle", 216574, "Aquila chrysaetos canadensis" ] ] ] ] ],
+ ["Haliaeetus", 8968, null,
+ [ ["Bald eagle", 52644, "Haliaeetus leucocephalus" ],
+ ["White-tailed eagle", 8969, "Haliaeetus albicilla" ] ] ] ] ] ] ],
+ ["Falconidae", 8949, null,
+ [ ["Falco", 8952, null,
+ [ ["Peregrine falcon", 8954, "Falco peregrinus" ],
+ ["Saker falcon", 345164, "Falco cherrug" ] ] ] ] ] ] ],
+ ["Gaviiformes", 30411, null,
+ [ ["Gaviidae", 30412, null,
+ [ ["Gavia", 37038, null,
+ [ ["Red-throated loon", 37040, "Gavia stellata" ] ] ] ] ] ] ],
+ ["Gruiformes", 9108, null,
+ [ ["Cariamidae", 54378, null,
+ [ ["Cariama", 54379, null,
+ [ ["Red-legged seriema", 54380, "Cariama cristata" ] ] ] ] ],
+ ["Eurypygidae", 54381, null,
+ [ ["Eurypyga", 54382, null,
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+ [ ["American crow", 85066, "Corvus brachyrhynchos" ],
+ ["Corvus cornix", 181096, null,
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+ ["Muscicapidae", 36291, null,
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+ ["Threskiornithidae", 33574, null,
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+ ["Psittaculidae", 1545690, null,
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+ [ ["Barn owl", 56313, "Tyto alba" ] ] ] ] ] ] ],
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+ ["Chinese alligator", 38654, "Alligator sinensis" ] ] ] ] ] ] ],
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+ ["Yellowbelly pufferfish", 433684, "Takifugu flavidus" ] ] ],
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+ ["Guppy", 8081, "Poecilia reticulata" ] ] ],
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+ ["D. simulans", 7240, "Drosophila simulans" ],
+ ["D. yakuba", 7245, "Drosophila yakuba" ] ] ],
+ ["ananassae subgroup", 32347, null,
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+ ["bipectinata species complex", 186282, null,
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+ ["elegans subgroup", 32348, null,
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+ ["eugracilis subgroup", 32349, null,
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+ ["montium subgroup", 32352, null,
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+ ["D. suzukii", 28584, "Drosophila suzukii" ] ] ],
+ ["takahashii subgroup", 32354, null,
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+ ["D. pseudoobscura", 7237, "Drosophila pseudoobscura",
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+ ["willistoni group", 32365, null,
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+ ["C. briggsae", 6238, "Caenorhabditis briggsae" ],
+ ["C. japonica", 281687, "Caenorhabditis japonica" ],
+ ["C. remanei", 31234, "Caenorhabditis remanei" ],
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+ ["C. sp. 9 ju1422", 1611254, "Caenorhabditis nigoni" ],
+ ["C. tropicalis", 1561998, "Caenorhabditis tropicalis" ] ] ] ] ] ] ],
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+ ["Bunostominae", 53477, null,
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+["Viruses", 10239, null,
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+ ["Bundibugyo ebolavirus", 565995, "Bundibugyo virus" ],
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+ ["Sudan ebolavirus", 186540, "Sudan ebolavirus" ],
+ ["Tai forest ebolavirus", 186541, "Tai Forest ebolavirus" ] ] ],
+ ["Marburgvirus", 186537, null,
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+ ["ssRNA positive-strand viruses, no DNA stage", 35278, null,
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+ [ ["Severe acute respiratory syndrome-related coronavirus", 694009, null,
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+ ["Retro-transcribing viruses", 35268, null,
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