dc8e5f43f137fd11ff0f00cb92ae20c31e1a7812 chmalee Mon Apr 18 14:40:36 2016 -0700 Updating image for gtex announcement, refs #15645 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index ca02c37..085b3cd 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -64,31 +64,33 @@ <font color="#006666" size="4"><b>19 April 2016 - New Genotyping Tissue Expression Track for hg19 and hg38!</b></font> <p> We are excited to announce the release of a new track based on data from the <a href="http://commonfund.nih.gov/GTEx/index" TARGET = _BLANK> Genotyping Tissue Expression Consortium</a> V6 data freeze. This track displays tissue-specific gene expression for a single gene based on RNA-Seq data. The original data for this track can be found at the <a href="http://www.gtexportal.org/home" target = _blank>GTEX Portal</a> hosted by the Broad Institute. <p> This track also features a new display method that extends the traditional Genome Browser display — a bar graph! Each bar graph depicts the expression level (in RPKM) of the various tissues assayed by the GTEX Consortium, and is specific to each gene, not the graph's vertical location in the browser! <p> - <center><img src="images/gtexAnnounceExample.png"></center> + <a href="../../cgi-bin/hgTracks?hgS_doLoadUrl=submit&hgS_loadUrlName=http://hgwdev.cse.ucsc.edu/goldenPath/help/examples/sessions/gtexAnnouncementSession" + target=_blank> + <center><img src="images/gtexAnnounceExample.png" width=75%></center></a> <p> Notice how the blue gene-model underneath the graph extends past the end of the graph? This gene model represents the target of the RNA-Seq experiment, and the graph displays the RPKM levels across many different tissues for the <em>entire</em> gene. Traditionally the 3 purple bars would be associated with the intron of TCAP gene, in this case those three bars indicate that the entire gene is highly expressed in cardiac and skeletal muscle tissue. Clicking on the graph brings up a description page which displays a more detailed box and whisker plot of the RPKM data, as well as a description about all the methods used in the generation of the data. <p> Credit goes to Kate Rosenbloom for implementing this feature. --> <hr> <p> <font color="#006666" size="4"><b> 15 April 2016 - dbSNP 146 Available for hg19 and hg38</b></font>