Commits for braney

v332_base to v333_preview (2016-05-02 to 2016-05-09) v333

1e2e00c67a11edf9693b019c75596e2158723ba0 Mon May 2 15:40:57 2016 -0700

• add a mode to bedOrBlocks to cluster based on name, use this mode to
  build the pFam track on the new hg38 knownGene
  
  • src/hg/bedOrBlocks/bedOrBlocks.c - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh - lines changed 1, context: html, text, full: html, text
  • src/inc/basicBed.h - lines changed 3, context: html, text, full: html, text
  • src/lib/basicBed.c - lines changed 17, context: html, text, full: html, text

adc23952f6d63fea678296157f76ff84afc98d53 Wed May 4 14:43:49 2016 -0700

• some updates the bigPsl.html page
  
  • src/hg/htdocs/goldenPath/help/bigPsl.html - lines changed 66, context: html, text, full: html, text

699bed02317b5aa434c08fd446099623c4f7f54a Thu May 5 14:51:21 2016 -0700

• working on bigMaf doc
  
  • src/hg/hgc/hgc.c - lines changed 14, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigMaf.html - lines changed 88, context: html, text, full: html, text
  • src/hg/lib/customFactory.c - lines changed 38, context: html, text, full: html, text

48607395c5be6a047d54429310deeada24198b36 Fri May 6 15:57:51 2016 -0700

• some tweaks to get bigMaf custom tracks to work
  
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text

6a74b39270290c9a2718459dba60e6b2587c2e76 Fri May 6 18:22:31 2016 -0700

• various changes to support and doc bigChain custom tracks
  
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigChain.html - lines changed 69, context: html, text, full: html, text
  • src/hg/lib/chainNetDbLoad.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/customFactory.c - lines changed 18, context: html, text, full: html, text