File Changes for hiram

v332_base to v333_preview (2016-05-02 to 2016-05-09) v333

• src/browserbox/usr/local/apache/cgi-bin/hg.conf
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    c8a3f2f43eb4f12007408a767bce133ab98bcfde Mon May 2 14:07:34 2016 -0700
    gBiB v332 now using new gateway phylo tree image refs #17202
    
• src/hg/htdocs/images/phylo/cavPor3.5way.png
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    033b8ed0e57429271ce63c0e781d75df5a958a0a Thu May 5 15:19:44 2016 -0700
    5-way phylo tree for cavPor3 refs #17180
    
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    7276e8318a5765c41ca1183ac4941f39f910ea51 Thu May 5 15:30:53 2016 -0700
    incorrect name for 5way.png
    
• src/hg/htdocs/images/phylo/cavPor3_5way.png
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    b47d3a1cba5a433a2b145e1021ccb3f52deb2ae1 Thu May 5 15:25:55 2016 -0700
    5-way phylo tree for cavPor3 refs #17180
    
• src/hg/htdocs/images/phylo/galVar1_5way.png
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    9d85b4c0cb35e2be8b1b41277d7d5a7e1d79aaa3 Tue May 3 12:48:49 2016 -0700
    5-way phylo tree for Malayan flying lemur refs #17180
    
• src/hg/makeDb/doc/cavPor3.txt
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    fb489d6bfc25b542c4cca14e61e38c3eb1353298 Thu May 5 15:29:45 2016 -0700
    multiz5way frames done refs #17180
    
• src/hg/makeDb/doc/galVar1/lastzRuns.txt
  • lines changed 62, context: html, text, full: html, text
    aa8251bd333deaa55fff02b1df38775160e0ab58 Tue May 3 14:01:27 2016 -0700
    5-way multiz done refs #17180
    
• src/hg/makeDb/doc/galVar1/multiz5way.txt
  • lines changed 1564, context: html, text, full: html, text
    aa8251bd333deaa55fff02b1df38775160e0ab58 Tue May 3 14:01:27 2016 -0700
    5-way multiz done refs #17180
    
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    c925f0b56667c9987c4c16f3833f78b15d248d6e Thu May 5 10:02:29 2016 -0700
    gap annotation done refs #17180
    
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    329d0f2f0ebe4a6a826c4db6bfdd60392e416442 Thu May 5 15:29:13 2016 -0700
    frames done refs #17180
    
• src/hg/makeDb/doc/hg38/lastzRuns.txt
  • lines changed 69, context: html, text, full: html, text
    5399f1fc35a8da92c078bf4753235fab3b02c268 Tue May 3 14:57:18 2016 -0700
    lastz run on galVar1 refs #17180
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 66, context: html, text, full: html, text
    d390a45c2e67726a563a7db85c3139793c7cc05c Tue May 3 12:19:31 2016 -0700
    lastz run to galGal1 refs #17180
    
• src/hg/makeDb/trackDb/galVar/galVar1/trackDb.5way.ra
  • lines changed 102, context: html, text, full: html, text
    1f78713caba1393510be4f29850bc395074f0492 Tue May 3 15:18:59 2016 -0700
    adding multiz 5-way alignment track refs #17180
    
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    3d953a2264e19f75f2ff2f26efb04ef9ddf31830 Tue May 3 15:42:04 2016 -0700
    no frames yet refs #17180
    
  • lines changed 2, context: html, text, full: html, text
    798885291382ef8378541aca4da24d307b05f02b Thu May 5 15:12:26 2016 -0700
    turning on frames feature refs #17180
    
• src/hg/makeDb/trackDb/galVar/galVar1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    1f78713caba1393510be4f29850bc395074f0492 Tue May 3 15:18:59 2016 -0700
    adding multiz 5-way alignment track refs #17180
    
• src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.5way.ra
  • lines changed 102, context: html, text, full: html, text
    0828e268f41122eb4a3d48b22a823b9151c37fdb Tue May 3 15:51:27 2016 -0700
    adding 5-way multiz refs #17180
    
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    798885291382ef8378541aca4da24d307b05f02b Thu May 5 15:12:26 2016 -0700
    turning on frames feature refs #17180
    
• src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra
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    0828e268f41122eb4a3d48b22a823b9151c37fdb Tue May 3 15:51:27 2016 -0700
    adding 5-way multiz refs #17180
    
• src/hg/mouseStuff/chainCleaner/NetFilterNonNested.perl
  • lines changed 462, context: html, text, full: html, text
    fbdd2992e994a348c9b2d14922f872d85edc66f7 Mon May 9 09:58:19 2016 -0700
    adding chainCleaner code from Michael Hiller refs #17286
    
• src/hg/mouseStuff/chainCleaner/chainCleaner.c
  • lines changed 1900, context: html, text, full: html, text
    fbdd2992e994a348c9b2d14922f872d85edc66f7 Mon May 9 09:58:19 2016 -0700
    adding chainCleaner code from Michael Hiller refs #17286
    
• src/hg/mouseStuff/chainCleaner/makefile
  • lines changed 3, context: html, text, full: html, text
    fbdd2992e994a348c9b2d14922f872d85edc66f7 Mon May 9 09:58:19 2016 -0700
    adding chainCleaner code from Michael Hiller refs #17286
    
• src/hg/utils/automation/accRsu.pl
  • lines changed 21, context: html, text, full: html, text
    18e1d22e10b537ad3813c365bd4cae8c59f59d87 Thu May 5 12:31:53 2016 -0700
    handle the case of no curated genes and sparse/missing description text refs #13673
    
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 27, context: html, text, full: html, text
    18e1d22e10b537ad3813c365bd4cae8c59f59d87 Thu May 5 12:31:53 2016 -0700
    handle the case of no curated genes and sparse/missing description text refs #13673
    
• src/utils/qa/weeklybld/boxRelease.csh
  • lines changed 2, context: html, text, full: html, text
    4d05ee12364aabb2ea43c2751538ef834001d77b Tue May 3 16:20:18 2016 -0700
    correct grep command to find running boxes refs #17202
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    b05b7e03048f62c7a326227876ca7153843f08fe Mon May 9 10:08:59 2016 -0700
    v333 preview1 refs #17287